EY684052

Overview
NameEY684052
Unique NameEY684052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.722e-32
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            GSCN +V   I+  +M++SE+EL +                K E++EA     +  +E  R + +  +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+
Sbjct:  528 GSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSK 712          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.722e-32
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            GSCN +V   I+  +M++SE+EL +                K E++EA     +  +E  R + +  +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+
Sbjct:  528 GSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSK 712          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.722e-32
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            GSCN +V   I+  +M++SE+EL +                K E++EA     +  +E  R + +  +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+
Sbjct:  528 GSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSK 712          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.722e-32
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            GSCN +V   I+  +M++SE+EL +                K E++EA     +  +E  R + +  +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+
Sbjct:  528 GSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSK 712          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.722e-32
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            GSCN +V   I+  +M++SE+EL +                K E++EA     +  +E  R + +  +  CAYAG+GNVLKVQ LL  C++H +  E                       A+QG AVLGIA++AM EE+G EMA+R+  HLL+YGE  +RRAVPLAL L+ +SNP++N++DTLS+
Sbjct:  528 GSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSK 712          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.509e-28
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQH-----HEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            G+CN +VA  I+  LM+R ES   +                KQ+  +AT E  K    KI +  ++ +  C+YAGTGNVL +Q LL  C++       E     Q  A LG+A +AM E++G EM +R  +H++ YGE +IR+A+PLALGLL  SNP++ + DTLSR
Sbjct:  527 GTCNGDVASTILQTLMEREESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQAEILVDICSYAGTGNVLHIQKLLHICSEPPSDDAKESETTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRIFDTLSR 693          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 7.488e-28
Identity = 73/169 (43.20%), Postives = 96/169 (56.80%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDR-SESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGP------AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            GS N EV++AI+  L+D  S S L +                +QE V+   E  K     + K   +    CA+AGTG VLK+Q LL  C +H E GE  +G       AVLGI ++AM E++G EM +R   HL+ YGE NIRRAVPLA+GL+  SNP++ V DTLSR
Sbjct:  536 GSSNSEVSEAIVTTLLDEESGSRLNDKWSRFLALGLGLLYFGRQEQVDVILETLKAVEHPMAKPTAVLAEICAWAGTGAVLKIQELLHICNEHIEDGEEKKGEELLQAYAVLGIGLIAMGEDVGQEMVLRHFGHLMHYGEANIRRAVPLAMGLISPSNPQMKVYDTLSR 704          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 69/163 (42.33%), Postives = 96/163 (58.90%), Query Frame = 2
Query:    2 GSCNEEVAQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRL 490
            GSC+ E++   +  L+ R  +   E                KQ++ E   E  K    K  +Y  +T+ +CAYAGTGNVLKVQN+L  C+   E    + G AVL IA++AM EELG +M +R  +HLLQ G  +I+RA+PLALGLL  SNP++ +MD LS+L
Sbjct:  531 GSCDPELSTLFVQTLIQRGTAA-SESHARFLHLGLGLLYLGKQDAAELALETLKAIEGKGGEYARLTVEACAYAGTGNVLKVQNMLHFCSDGQEN--PHHGLAVLSIALIAMGEELGSDMCLRMFDHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKL 690          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.980e-12
Identity = 31/60 (51.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  308 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            AVLGIA++A+ E++G EM++R   HL+ YG ++IRR VPLA+G++ +S+P++ V DTL+R
Sbjct:  739 AVLGIALIALGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTR 798          
BLAST of EY684052 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.586e-12
Identity = 31/60 (51.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query:  308 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSR 487
            AV+GIA++ M EE+G EM++R   HL+ YG ++IRR VPLA+GL+ +++P++ V DTL+R
Sbjct:  729 AVIGIALITMGEEIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGLVSVADPQMKVFDTLTR 788          
The following BLAST results are available for this feature:
BLAST of EY684052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD2_RAT1.722e-3240.5426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_PONAB1.722e-3240.5426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_MOUSE1.722e-3240.5426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_HUMAN1.722e-3240.5426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_BOVIN1.722e-3240.5426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
RPN1_SCHPO1.509e-2840.1226S proteasome regulatory subunit rpn1 OS=Schizosa... [more]
RPN1_NEUCR7.488e-2843.2026S proteasome regulatory subunit rpn-1 OS=Neurosp... [more]
PSMD2_DICDI1.277e-2742.3326S proteasome non-ATPase regulatory subunit 2 OS=... [more]
RPN1_YEAST1.980e-1251.6726S proteasome regulatory subunit RPN1 OS=Saccharo... [more]
RPN1_CANGA2.586e-1251.6726S proteasome regulatory subunit RPN1 OS=Candida ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-001-E09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684052 ID=EY684052; Name=EY684052; organism=Citrus sinensis; type=EST; length=968bp
GGGTTCCTGCAACGAAGAGGTCGCACAGGCGATCATATTTGCTTTGATGG
ACCGAAGTGAGTCAGAATTGGGGGAGCCGCTCACCCGACTTATACCTCTT
GGTCTTGGTCTTCTTTACCTTGGAAAGCAGGAAAGCGTGGAGGCCACAGC
AGAAGTCTCGAAGACATTCAATGAAAAGATCAGGAAATATTGTGATATGA
CACTGCTTTCCTGTGCATATGCTGGAACTGGGAATGTCCTCAAGGTTCAA
AACCTTTTGGGTCATTGTGCACAACATCATGAGAAAGGTGAAGCCTACCA
AGGACCTGCTGTGCTTGGAATTGCTATGGTAGCTATGGCTGAAGAATTGG
GTCTTGAGATGGCAATTCGATCATTAGAGCACCTTTTGCAGTATGGAGAG
CAGAACATTCGTCGTGCAGTTCCGTTGGCTCTTGGTCTCCTATGTATATC
AAACCCAAAGGTTAATGTTATGGACACATTAAGCCGGCTAAGACCATGAT
ACTGATTCAAAAGAAGCTATGGCTGGCGGCATATGATCGGGATTGACACG
GCAAGGACCTACAAATGAATAGAATAACACCGAGTGCTTAAAAAAATCTC
CACCCAAACCCACCCCAGGGCACTACCCCGTTGCGTGCACCCACGCCCCC
TGGTACAGAGGGACTGGGAACCCGTCCGCACGAACTCCGAACCAACCTCC
CCCCGGACACCCTAGCCCTCATCAGGCGGTCCACCCCTCCGCTCACCCGA
GCCTGCTCCACCCGCGGCTCCAGAGAGGTCGCGGAGTCGCCCGCATCACC
CCGGAGCCCGTCCTACCCGCAGGAGGCACTACATGCGCACCCTAACACTG
GGAACGATGACTCTTCGCGGCTCGTCCAAGTCTGCTGCCCCTCGTCCTTA
ACACGTCAATCCGATCCTGCGGACATCAAGGGCGCGCGGGTGGGACGCGC
CGGGACAAGCACCTACGA
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