EY684026

Overview
NameEY684026
Unique NameEY684026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.726e-25
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 485
            N+ ENK ICP  GS  NNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGEAPWWA
Sbjct:  167 NAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.167e-24
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 485
            N+ ENK ICP  GS  NNQGRVVRGPAPLSLALAH ++++GKVVFVPWTETDFRTGEAPWW+
Sbjct:  168 NAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 229          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.827e-24
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 485
            N+ ENK ICP  GS  NNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGE PWWA
Sbjct:  167 NAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.075e-23
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 485
            N+ ENK ICP  GS  NNQG+VVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTG++PWWA
Sbjct:  169 NTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.103e-23
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 485
            N+ ENK ICP  GS  NNQGRVVRGPAPLSLAL HA++++GKV+FVPW ETDFRTG+ PWWA
Sbjct:  164 NAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.518e-22
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = -1
Query:  303 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 485
            N+ ENK +CP  GS  NNQG+VVRGPAPLSLAL HA++++GKVVFVPW ETDFRTG+ PWW
Sbjct:  161 NAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.314e-21
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHAN--IENGKVVFVPWTETDFRTGEAPWWA 485
            N  ENK ICP  GS  N+QGRVVRGPAPLSLALAH +  +E+GKVVFVPW ETDFRTG+APWW+
Sbjct:  167 NQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 485
            N  ENK +CP  GS  NNQG+VVRGPAPLSLAL+H +I E GKVVFVPW ETDFRTGE PWW+
Sbjct:  168 NKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWWS 230          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = -1
Query:  300 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 485
            N  ENK +CP  GS  N QGRVVRGPAPLSLALAHA+I E GKV+FVPW ETDFRTG+APWW+
Sbjct:  167 NKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229          
BLAST of EY684026 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.196e-19
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = -1
Query:  303 NSVENKIICPWRGSHSNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 485
            N  ENK ICP  GS  +N G+VVRGPAPLSLALAHA + + K+ F PWTETDFRTG+ PWW
Sbjct:  118 NISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTETDFRTGKEPWW 178          

HSP 2 Score: 21.1718 bits (43), Expect = 2.196e-19
Identity = 7/11 (63.64%), Postives = 7/11 (63.64%), Query Frame = -3
Query:  478 HPGCRVPWKFS 510
            H GC VPW  S
Sbjct:  110 HLGCVVPWNIS 120          
The following BLAST results are available for this feature:
BLAST of EY684026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
UCRIB_TOBAC9.726e-2582.26Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_SPIOL2.167e-2479.03Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_TOBAC4.827e-2480.65Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU1.075e-2377.42Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ9.103e-2374.19Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT4.518e-2272.13Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA1.314e-2173.44Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG4.995e-2173.02Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH4.995e-2174.60Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_CYAP42.196e-1967.21Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-001-C05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684026 ID=EY684026; Name=EY684026; organism=Citrus sinensis; type=EST; length=944bp
AGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGAAAAAACTTATATC
CAACGTTGAAGCTGTAGCATTACATTGTTGAGCGTATGAATTTTTGAGAT
ACAAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAAGATTACAA
GATAGCATGATTCAAGCCAAGTAGCTTTACATGTTGTAAGCTTCATTCTG
ATAAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAAAGCAAACC
GACCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAACAAGTTTAA
GCCCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTCCATGGAAC
GAAGACTACCTTACCATTTTCAATGTTGGCATGAGCCAATGCCAATGACA
ATGGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGGAGTGGGATCCG
CGCCAGGGACAAATGATCTTGTTCTCAACTGAATTTCCATGGCACCCGAC
ATCCGGGGTGAATGGACCACATGCTTGATCACATTGGGGTGCCGCCGGGT
AGCCACTGCCTACAGTAACTCGCGAGGTGCATTACTAAAGACCAGTCGGG
CGAGGGAGCCGGACGACGGAGCGGGACCGAAACTCCAGCAGAGTAGTCAC
GCGCTACCAAACATGCGCGACTAAGCACGGGCCGAGAACTCAAGCCCCAC
ACCACCGAGCGACCTATCTAACCCGGCTCTGCCGCTGGCGCGATGACCAC
CTCAGACTCTCTCCACAAGAACACGCCCAACTGCCAACGAGAGCCGAAGC
GCACGACCCGCCCCTACGCAACCGGCACATGCATATACGCACTACCAACG
CTCCACCTCAAAACCTACACCCCATTCACGAGGGACCCAACCAAATCGAC
AAGCAACCTCGACTGCAAACCCACACCGTTACGCCCTGTCCACT
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