EY684018
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 261.536 bits (667), Expect = 5.101e-69 Identity = 132/179 (73.74%), Postives = 145/179 (81.01%), Query Frame = 1 Query: 133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669 VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A + + GPNANPL+LFPQG+P +G AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPML ELGKQNPQLVRLIQEHQADFLRLINEPV G Sbjct: 134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEG 311
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 259.225 bits (661), Expect = 2.532e-68 Identity = 148/237 (62.45%), Postives = 162/237 (68.35%), Query Frame = 1 Query: 1 PTPAVTPSTAPQTA---VPIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPGW--*GEILGE 693 P PA TP+ AP A V VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN +SGPNANPLDLFPQGLP+VG G GAG+LDFLRNS QFQ LRAMVQANPQ+LQPML ELGKQNP L+RLIQ+HQADFLRLINEPV G G +LG+ Sbjct: 126 PPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQ 358
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 213.386 bits (542), Expect = 1.593e-54 Identity = 118/225 (52.44%), Postives = 141/225 (62.67%), Query Frame = 1 Query: 1 PTPAVTPSTAPQTAVPIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669 PTP T S AP AV YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ + V P + P N A+ SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+L ELGKQNPQ+++LIQE+QA+FL LINEP G Sbjct: 124 PTPTATASPAPAVAVSSEADN------------------------YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEG 320
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 205.297 bits (521), Expect = 4.338e-52 Identity = 108/185 (58.38%), Postives = 135/185 (72.97%), Query Frame = 1 Query: 136 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPGW*GE 681 YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A S GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPML ELGKQNPQL+RLIQE+QA+FL+L+NEP G GE Sbjct: 135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------------PVAPASGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGE 306
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 196.823 bits (499), Expect = 1.543e-49 Identity = 104/185 (56.22%), Postives = 132/185 (71.35%), Query Frame = 1 Query: 136 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPGW*GEI 684 YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE + P G G S GPN++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPML ELGKQNPQL+RLIQE+QA+FL+L+NEP G G++ Sbjct: 133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDV 304
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.521e-25 Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 1 Query: 133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA++ ++ + ++G L+FLRN PQFQ +R ++Q NP LL +L ++G++NPQL++ I +HQ F++++NEPV Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTGAPQSSAVAAAAATTTATTT--------------TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.711e-25 Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 1 Query: 133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P AA++ P ++ + ++G L+FLRN PQFQ +R ++Q NP LL +L ++G++NPQL++ I +HQ F++++NEPV Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---PAAST---------------GAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.007e-24 Identity = 62/177 (35.03%), Postives = 97/177 (54.80%), Query Frame = 1 Query: 133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P + + P + + + +G L+FLRN PQFQ +R ++Q NP LL +L ++G++NPQL++ I +HQ F++++NEPV Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.007e-24 Identity = 62/177 (35.03%), Postives = 97/177 (54.80%), Query Frame = 1 Query: 133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P + + P + + + +G L+FLRN PQFQ +R ++Q NP LL +L ++G++NPQL++ I +HQ F++++NEPV Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 8.526e-24 Identity = 68/175 (38.86%), Postives = 94/175 (53.71%), Query Frame = 1 Query: 145 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669 AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S Q + AAG L+FLR+ PQFQ +R ++Q NP LL +L +LG++NPQL++ I HQ F++++NEP PG Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP-PG 289 The following BLAST results are available for this feature:
BLAST of EY684018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684018 ID=EY684018; Name=EY684018; organism=Citrus sinensis; type=EST; length=965bpback to top |