EY684018

Overview
NameEY684018
Unique NameEY684018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 5.101e-69
Identity = 132/179 (73.74%), Postives = 145/179 (81.01%), Query Frame = 1
Query:  133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669
            VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +              + GPNANPL+LFPQG+P   +G AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPML ELGKQNPQLVRLIQEHQADFLRLINEPV G
Sbjct:  134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEG 311          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 2.532e-68
Identity = 148/237 (62.45%), Postives = 162/237 (68.35%), Query Frame = 1
Query:    1 PTPAVTPSTAPQTA---VPIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPGW--*GEILGE 693
            P PA TP+ AP  A   V                             VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN               +SGPNANPLDLFPQGLP+VG G  GAG+LDFLRNS QFQ LRAMVQANPQ+LQPML ELGKQNP L+RLIQ+HQADFLRLINEPV G    G +LG+
Sbjct:  126 PPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQ 358          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.593e-54
Identity = 118/225 (52.44%), Postives = 141/225 (62.67%), Query Frame = 1
Query:    1 PTPAVTPSTAPQTAVPIXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669
            PTP  T S AP  AV                              YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+               SSGPNA+PLDLFPQ LP+  + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+L ELGKQNPQ+++LIQE+QA+FL LINEP  G
Sbjct:  124 PTPTATASPAPAVAVSSEADN------------------------YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEG 320          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 4.338e-52
Identity = 108/185 (58.38%), Postives = 135/185 (72.97%), Query Frame = 1
Query:  136 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPGW*GE 681
            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A                 S GPN++PLDLFPQ      +G+   G+L+FLRN+ QFQ LR MV +NPQ+LQPML ELGKQNPQL+RLIQE+QA+FL+L+NEP  G  GE
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------------PVAPASGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGE 306          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.543e-49
Identity = 104/185 (56.22%), Postives = 132/185 (71.35%), Query Frame = 1
Query:  136 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPGW*GEI 684
            YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G                   S GPN++PLDLFPQ   +  S AAG   G+L+FLR + QFQ LR+MV +NPQ+LQPML ELGKQNPQL+RLIQE+QA+FL+L+NEP  G  G++
Sbjct:  133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDV 304          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.521e-25
Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 1
Query:  133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P   QAA++              ++                  + ++G   L+FLRN PQFQ +R ++Q NP LL  +L ++G++NPQL++ I +HQ  F++++NEPV
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTGAPQSSAVAAAAATTTATTT--------------TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.711e-25
Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 1
Query:  133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    AA++                 P ++             + ++G   L+FLRN PQFQ +R ++Q NP LL  +L ++G++NPQL++ I +HQ  F++++NEPV
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---PAAST---------------GAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.007e-24
Identity = 62/177 (35.03%), Postives = 97/177 (54.80%), Query Frame = 1
Query:  133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    +  +                 P +  +           +  +G   L+FLRN PQFQ +R ++Q NP LL  +L ++G++NPQL++ I +HQ  F++++NEPV
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.007e-24
Identity = 62/177 (35.03%), Postives = 97/177 (54.80%), Query Frame = 1
Query:  133 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    +  +                 P +  +           +  +G   L+FLRN PQFQ +R ++Q NP LL  +L ++G++NPQL++ I +HQ  F++++NEPV
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.526e-24
Identity = 68/175 (38.86%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  145 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669
            AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E       P +G    S                           Q      + AAG   L+FLR+ PQFQ +R ++Q NP LL  +L +LG++NPQL++ I  HQ  F++++NEP PG
Sbjct:  153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP-PG 289          
The following BLAST results are available for this feature:
BLAST of EY684018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23D_ARATH5.101e-6973.74Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.532e-6862.45Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ1.593e-5452.44Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH4.338e-5258.38Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH1.543e-4956.22Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_HUMAN4.521e-2536.16UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN7.711e-2536.16UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_RAT1.007e-2435.03UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.007e-2435.03UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23A_MOUSE8.526e-2438.86UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-001-B08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684018 ID=EY684018; Name=EY684018; organism=Citrus sinensis; type=EST; length=965bp
CCAACCCCTGCAGTGACCCCATCAACAGCTCCTCAGACTGCCGTGCCAAT
CTCTACAGAGCCTACACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTG
TGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCA
TCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCT
TGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCTCTTC
GAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTCTGGT
ATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTAATGG
ACAAGCTGCTAACTCTCCAACTCAGATGCCACAGCCAACCCAACCGGCAC
CCGTTACTTCTAGTGGGCCAAATGCAAATCCTTTGGACCTCTTTCCTCAG
GGCCTTCCTGACGTGGGTTCAGGTGCAGCTGGCGCTGGCAGTCTTGACTT
TTTACGTAATAGTCCACAGTTTCAAGTTTTGCGAGCTATGGTGCAGGCAA
ATCCTCAATTATTGCAGCCCATGCTTTCAGAGTTGGGGAAACAAAATCCT
CAGCTAGTGAGGCTTATTCAGGAACATCAGGCTGACTTCCTTCGGCTTAT
CAATGAACCTGTTCCAGGGTGGTGAGGGGAAATTTTGGGGGAACCCCCTT
GCTGGGTTTAATTGCCCACGCCCAAACCAACTCACCCCCCAAAAAAAGCG
CAACCCATACAACAGCCTTTAATGGGCAAGGCGCTTTTCATCCACCCAAC
TTACTTTGGTACGTGTCCCTTTATTCTGACAAAATAACAATAACGTAATT
TCATGACACAATAAATTTAATGAAAAAAATTTGCTAGAGAATATGAGGGA
ATGGTACCGCACACGGGGCAAAAACACAACACAAACACAAGCATGGACAC
TGACCACAACGCCAT
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