EY683990

Overview
NameEY683990
Unique NameEY683990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 366.311 bits (939), Expect = 1.521e-100
Identity = 185/210 (88.10%), Postives = 203/210 (96.67%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 650
            +GLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDSKKDIELIITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDSYEIEG E+K E+LQNL EFQFS V+FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Sbjct:  117 KGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 326          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 1.205e-97
Identity = 178/209 (85.17%), Postives = 199/209 (95.22%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 647
            +GLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDSK DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE
Sbjct:  114 KGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_PELUB (ATP synthase gamma chain OS=Pelagibacter ubique GN=atpG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.773e-32
Identity = 87/211 (41.23%), Postives = 122/211 (57.82%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GLCGG N+  +K +K+  +  S   K  K + +G K    L R  K  I   I+      +NY     +   I++N E   FD   I Y+KF +V++ +P    ++  +  E E  S       D+YE E  E   EIL NL     S  +F A+LEN+ SEQG+RMSAMD+++RNAGEM+D+LT+ YNR+RQA+IT ELIEIISGA +L
Sbjct:   88 RGLCGGFNTNIIKKAKTYFQKISDEGKTLKIITVGSKGYDQLKRVYKDAIVERISFKDSKTINYLDAEKVGKMIIENFEKEEFDVCTIFYNKFKNVITQIPQEQQIIPLKTSEAEENSSE-----DNYEFEPDED--EILSNLLPKNISTQIFKAMLENSASEQGSRMSAMDNATRNAGEMVDKLTIEYNRSRQAAITKELIEIISGAESL 291          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.158e-32
Identity = 87/211 (41.23%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  S    G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:   88 RGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGASATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.149e-31
Identity = 86/211 (40.76%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  +    G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:   88 RGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_JANSC (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.960e-31
Identity = 85/213 (39.91%), Postives = 124/213 (58.22%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSP--ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GLCGG NST V+ ++   +   G  K  K + +G+K +  L RD    +   +       L Y   + +A D+L   E   FD   I +++F SV+S +PT   ++    E VE   ++    G L  YE     ++  +L++L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M+DRLT+ YNR+RQA IT+ELIEIISGA AL
Sbjct:   88 RGLCGGFNSTIVRKARVHAQKLLGEGKTIKILTVGKKGREQLRRDYADHLIGHVDLSDVKRLGYADAASIATDVLNRFEEDEFDVATIFFNRFESVISQIPTATQIIPAVFEDVEEADDTSKDSGTLYEYE----PSEEAVLEDLLPRGIATQIFTALLENGASEQGARMSAMDNATRNAGDMIDRLTIEYNRSRQAVITSELIEIISGAEAL 296          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.366e-31
Identity = 86/211 (40.76%), Postives = 119/211 (56.40%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL + +  + G  G   + E E  E    IL+ L     +  +F A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:   88 RGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAELPQTDGAAKGA-GSDAAMEFEPSEET--ILETLLPKNLTVQVFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 295          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.659e-30
Identity = 83/212 (39.15%), Postives = 121/212 (57.08%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GLCG  NS+  ++++   +  +   +  K + +G+K   IL R+ +  I  +I       L +     +A ++L   E   FD   + YS+F SV+  +PT     + +++  E    G+  + D+ YE E  E  GEIL  L     +  +  A+LENA SEQGARMSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:   88 RGLCGAFNSSIARLARDHARRLTAEGRTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFDNAETIAQNLLGRFEAGEFDIATLFYSRFRSVIVQIPT-----AQQIIPAEIPPAGEAAQTDAAYEYEPDE--GEILAALLPKNLTVQILRALLENAASEQGARMSAMDNATRNAGEMIKKQTLVYNRTRQAQITKELIEIISGAEAL 292          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.167e-30
Identity = 82/213 (38.50%), Postives = 126/213 (59.15%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD        + +TE+++  ++Y     +A D+L      EFD   I Y+KF +VVS +PT   ++  +  ++E E    L + +  E         IL +L     +  +F+A+LEN  SEQGARMSAMD+++RNAGEM++ LT+ +NR+RQA IT ELIEIISGA AL
Sbjct:   88 RGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQIIPAKFEQQEGEEASTLFDYEPDE-------EAILADLLPRGVATQIFSALLENGASEQGARMSAMDNATRNAGEMIENLTIEFNRSRQAVITNELIEIISGAEAL 291          
BLAST of EY683990 vs. ExPASy Swiss-Prot
Match: ATPG_PARDP (ATP synthase gamma chain OS=Paracoccus denitrificans (strain Pd 1222) GN=atpG PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.830e-30
Identity = 84/211 (39.81%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   21 QGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 644
            +GL GG NS+ VK+++   +      K+   + +G+K +  L R+        +   +   + Y     +AD+IL    N EFD   + Y++F SV+S +PT   V+ P ++E      G+ G    Y+ E  E    IL +L     +  +F A+LENA SEQGARM+AMD+++RNAG+M+DRLT  YNR+RQA+IT ELIEIISGA AL
Sbjct:   88 RGLAGGFNSSIVKLARLRLQELQAQGKQVSILTVGKKGREQLKREYGDLFVNHVDLSEVKRIGYDNARAIADEILDRFDNGEFDVATLFYNRFESVISQVPTARQVI-PAVIEE-----GEAGASSLYDYEPDENA--ILNDLLPRSVATQVFAALLENAASEQGARMTAMDNATRNAGDMIDRLTTVYNRSRQAAITKELIEIISGAEAL 290          
The following BLAST results are available for this feature:
BLAST of EY683990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG3_IPOBA1.521e-10088.10ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH1.205e-9785.17ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_PELUB1.773e-3241.23ATP synthase gamma chain OS=Pelagibacter ubique GN... [more]
ATPG_METC45.158e-3241.23ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_METEP1.149e-3140.76ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_JANSC1.960e-3139.91ATP synthase gamma chain OS=Jannaschia sp. (strain... [more]
ATPG_METPB4.366e-3140.76ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_METS41.659e-3039.15ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_ROSDO2.167e-3038.50ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_PARDP2.830e-3039.81ATP synthase gamma chain OS=Paracoccus denitrifica... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-H03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683990 ID=EY683990; Name=EY683990; organism=Citrus sinensis; type=EST; length=988bp
CCACGCGTCCGCTCTTCTGACAAGGTCTATGTGGTGGAATTAACTCTACT
GCAGTTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAA
AGAAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTAC
GTGACTCGAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAAT
CCTCTAAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAA
TGTAGAATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCTGTGG
TCTCCTTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAG
AGAGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAAT
TGAAGGCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCC
AATTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCTTGCAGTGAG
CAAGGGGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCGGGAGA
AATGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTA
TCACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGC
TGATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAAT
CCTTGGTGGAGGCTTTGTTCAACCTTCAATGTGGTACTTTCATANAAATT
TTTGTTGAGCCTCTCCAATAATCTCTCCCGTGGTCAAATTTCTTTTTGGG
GGAATTTAACATTATAACTTGGCGAATTTTTTCATTTAATTTTTTTGATT
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGC
CCCCCCAAAAGGGATTCCAACCCTTAACTTAACGCGGTGGGTGGGCGAAC
GCTTAAAACCTCTTTTCTAAAGGGGGGTCCCCCAAAAT
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