EY683987

Overview
NameEY683987
Unique NameEY683987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.845e-40
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 251
            R VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR+FSENKREYNRRVRE+VEQSWTAD
Sbjct:   71 RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWTAD 152          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.081e-39
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 251
            R VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR+FSE+KREYNRRVRE+VEQSWTAD
Sbjct:   71 RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWTAD 152          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.412e-39
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 251
            R VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR++SENKREYNR+VRE+VEQSWTAD
Sbjct:   71 RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWTAD 152          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.366e-39
Identity = 76/82 (92.68%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 251
            R VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR++SE+KREYNRRVR++VEQSWTAD
Sbjct:   71 RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.908e-36
Identity = 69/79 (87.34%), Postives = 78/79 (98.73%), Query Frame = 3
Query:   12 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTA 248
            +S+MFHPN+YADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNSPANSE+ARLF ENKREYNR+V+EIVEQSW++
Sbjct:   73 LSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWSS 151          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.616e-35
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 242
            R VSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+SPAN+EAARLFSENKREYNR+V EIVEQS+
Sbjct:   71 RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQSY 149          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.024e-31
Identity = 61/77 (79.22%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   12 VSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 242
            +S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+L+ EN+REY +RV++IVEQSW
Sbjct:   73 ISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.174e-31
Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 242
            R VS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:   71 RFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 9.174e-31
Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 242
            R VS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:   71 RFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of EY683987 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.044e-30
Identity = 61/79 (77.22%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    6 RPVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 242
            R +S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:   71 RFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
The following BLAST results are available for this feature:
BLAST of EY683987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBC2_MEDSA2.845e-4096.34Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.081e-3995.12Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT1.412e-3993.90Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC1_ARATH5.366e-3992.68Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_DICDI1.908e-3687.34Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC3_ARATH1.616e-3591.14Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC1_CAEEL7.024e-3179.22Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE9.174e-3178.48Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN9.174e-3178.48Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2B_RAT2.044e-3077.22Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-G12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683987 ID=EY683987; Name=EY683987; organism=Citrus sinensis; type=EST; length=950bp
CCACGCGTCCGGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACGCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATTTGT
ATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGACAAC
CTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTTGGATG
TTGTGAACGGCCATCTTGCATTGTATTTTTTATGGTGATTGCTTATTCTG
GCNCAGAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTAAATT
CATGTAAGAATATGAAAACTGTTACGTTACAAGTATGAGTAATTTGTACG
AGAGGCGAAAGGGGGGGGGGCCCCCACTAAGAGGACACAATTATATTAAT
ACGGGGGGGGACAGAACCGCAAATGACTTCCTTTTAAAAGGGGAACCCAT
AATTTAAAAAGCAGAGGGAGGGGGGGATTTGTAAAAGCCCTGGAGGGGGG
GGGGGAAAAAAAACCCACTGGGGGTAGTTCAAAAAAAAATAAAATCCCTT
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