EY683969

Overview
NameEY683969
Unique NameEY683969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 8.095e-72
Identity = 117/135 (86.67%), Postives = 125/135 (92.59%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KW TLIEA+VDVKTTD Y LR+FCIGFTKR PNQVKRTCYAQASQI+
Sbjct:   28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIR 162          

HSP 2 Score: 48.1358 bits (113), Expect = 8.095e-72
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  529 ARLRQIRRKMREIMICSGSIV*S*GALVEKFIAEIMGKKRLKRATFNHIPLTKRFFFPKSEKSLKAPKFESLGKVEGRVQGNYS 780
            +++RQIRRKM EIM    S       LV KFI E++GK+ +++AT +  PL     F +  K LKAPKF+ LGK+   V G+Y+
Sbjct:  159 SQIRQIRRKMVEIMANQASSC-DLKELVSKFIPEVIGKE-IEKATSSIFPLQN--VFVRKVKILKAPKFD-LGKLM-EVHGDYA 236          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 8.096e-72
Identity = 117/135 (86.67%), Postives = 126/135 (93.33%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F  RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGMD TTDKLRSLV+KW +LIEA+VDVKTTDN+TLRMFCIGFTK+  NQVKRTCYAQ+SQIK
Sbjct:   28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIK 162          

HSP 2 Score: 48.9062 bits (115), Expect = 8.096e-72
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  529 ARLRQIRRKMREIMICSGSIV*S*GALVEKFIAEIMGKKRLKRATFNHIPLTKRFFFPKSEKSLKAPKFESLGKVEGRVQGNYS 780
            ++++QIRRKMREIM+           LV+KFI E +G++ +++AT +  PL   F   +  K LKAPKF+ +GK+   V G+YS
Sbjct:  159 SQIKQIRRKMREIMVTQAQTC-DLKELVQKFIPESIGRE-IEKATSSIYPLQNVFI--RKVKILKAPKFD-IGKLM-EVHGDYS 236          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.056e-71
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F+V+NVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E++A+RKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQI+
Sbjct:   28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIR 162          

HSP 2 Score: 50.447 bits (119), Expect = 1.056e-71
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  529 ARLRQIRRKMREIMICSGSIV*S*GALVEKFIAEIMGKKRLKRATFNHIPLTKRFFFPKSEKSLKAPKFESLGKVEGRVQGNYS 780
            +++RQIRRKMREIM+   +       LV KFI E++GK+ +++AT +  PL   F   +  K LK+PKF+ LGK+   V G+YS
Sbjct:  159 SQIRQIRRKMREIMVNQATSC-DLKELVRKFIPEMIGKE-IEKATSSIYPLQNVFI--RKVKILKSPKFD-LGKLM-EVHGDYS 236          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 240.35 bits (612), Expect = 1.960e-70
Identity = 113/135 (83.70%), Postives = 126/135 (93.33%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F VRNVGKTLVTRTQGTKIASEGL+HRVFE+SL DL  +E+H++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKW +LIEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQI+
Sbjct:   28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIR 162          

HSP 2 Score: 48.1358 bits (113), Expect = 1.960e-70
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  529 ARLRQIRRKMREIMICSGSIV*S*GALVEKFIAEIMGKKRLKRATFNHIPLTKRFFFPKSEKSLKAPKFESLGKVEGRVQGNYS 780
            +++RQIRRKMREIM+           LV+KFI E +G++ +++AT +  PL   F   +  K LKAPKF+ LGK+   V G+Y+
Sbjct:  159 SQIRQIRRKMREIMVNQAQSC-DLKDLVQKFIPESIGRE-IEKATSSIYPLQNVFI--RKVKILKAPKFD-LGKLM-EVHGDYN 236          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.184e-69
Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLR+FCI FTK+  NQ K+TCYAQ+SQI+
Sbjct:   28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIR 162          

HSP 2 Score: 46.595 bits (109), Expect = 6.184e-69
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  529 ARLRQIRRKMREIMICSGSIV*S*GALVEKFIAEIMGKKRLKRATFNHIPLTKRFFFPKSEKSLKAPKFESLGKVEGRVQGNYS 780
            +++RQIRRKMREIM    +       LV+KFI E +G++ +++AT +  PL   +   +  K LKAPKF+ LGK+   V G+YS
Sbjct:  159 SQIRQIRRKMREIMTNMATSC-DLKELVKKFIPESIGRE-IEKATSSIYPLQNVYI--RKVKILKAPKFD-LGKLM-EVHGDYS 236          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.788e-68
Identity = 113/135 (83.70%), Postives = 125/135 (92.59%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F ++NVGKTLVTRTQGTKIASEGLKHRVFEVSL DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLRMFCI FTK+ PNQ KRTCYAQ+SQI+
Sbjct:   28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIR 162          

HSP 2 Score: 43.1282 bits (100), Expect = 1.788e-68
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  529 ARLRQIRRKMREIMICSGSIV*S*GALVEKFIAEIMGKKRLKRATFNHIPLTKRFFFPKSEKSLKAPKFESLGKVEGRVQGNYS 780
            +++RQIRRKM EIM    S       LV KFI E +G++ +++AT +  PL   +   +  K LKAPKF+ +GK+   V G+YS
Sbjct:  159 SQIRQIRRKMVEIMRNQASSC-DLKELVAKFIPESIGRE-IEKATSSIFPLQNVYI--RKVKILKAPKFD-IGKLM-EVHGDYS 236          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 5.641e-67
Identity = 112/135 (82.96%), Postives = 124/135 (91.85%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEGLKHRVFEV L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQI+
Sbjct:   28 DWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIR 162          

HSP 2 Score: 44.2838 bits (103), Expect = 5.641e-67
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  529 ARLRQIRRKMREIMICSGSIV*S*GALVEKFIAEIMGKKRLKRATFNHIPLTKRFFFPKSEKSLKAPKFESLGKVEGRVQGNYS 780
            +++RQIRRKM EIM    S       LV KFI E +G++ +++AT +  PL   F   +  K LKAPKF+ +GK+   V G+YS
Sbjct:  159 SQIRQIRRKMVEIMRNQASSC-DLKELVAKFIPESIGRE-IEKATSSIFPLQNVFI--RKVKILKAPKFD-IGKLM-EVHGDYS 236          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.946e-63
Identity = 116/135 (85.93%), Postives = 125/135 (92.59%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCI FTK+  NQ K+T YAQ+SQI+
Sbjct:   28 DWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIR 162          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 1.121e-61
Identity = 139/243 (57.20%), Postives = 164/243 (67.49%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK------TDSPQDEGDHDLLRQ--HRVILRGFGRKIHCXXXXXXXXXXXXL*PYTPYKKVFLPQK*KIFESS*I*IFGKS*REGPGELLLKDVGLKRKRPA*RTPFPEP 839
            DWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD YTLRMFCI FTKR  NQVKRTCYAQ+SQI+      ++    E     L++   + I    GR+I                   P + VF+ +K KI ++    + GK   E  G+   +DVG+K  RPA  T   EP
Sbjct:   28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIY-----------PLQNVFI-RKVKILKAPKFDL-GKL-MEVHGDYTAEDVGVKVDRPADETMVEEP 256          
BLAST of EY683969 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.498e-61
Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 3
Query:  135 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIK 539
            DWYDIKAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL+ +E+ AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TLIE++VDVKTTDNYTLR+FCI FTKR  NQVKRTCYAQ+SQI+
Sbjct:   28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIR 162          
The following BLAST results are available for this feature:
BLAST of EY683969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
RS3A_ORYSJ8.095e-7286.6740S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A_HELAN8.096e-7286.6740S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_CICAR1.056e-7185.9340S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO1.960e-7083.7040S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A1_VITVI6.184e-6983.7040S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A_TOBAC1.788e-6883.7040S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_DAUCA5.641e-6782.9640S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A2_VITVI5.946e-6385.9340S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH1.121e-6157.2040S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_BRARA2.498e-6183.7040S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-F06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683969 ID=EY683969; Name=EY683969; organism=Citrus sinensis; type=EST; length=1026bp
CAACACATACCCAGCAGCTGCTGCTACTGCGTAGTTGCTAAACTATCACA
AGCATGGCCGTCGGGAAGAACAAGAGGATTTCCAAGGGGAAGAAAGGAGG
CAAGAAGAAGGCTGCCGATCCATTCGCCAAGAAGGACTGGTATGATATCA
AGGCTCCCTCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTACC
CGTACTCAGGGTACCAAGATTGCATCAGAAGGACTTAAACACAGAGTGTT
TGAGGTATCATTAGGTGATCTACATAATGAAGAAGAGCATGCTTACAGGA
AGATCAGACTAAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACAAAC
TTTTGGGGCATGGATTTCACTACAGACAAGCTGAGGTCCTTGGTTAGGAA
GTGGCATACGTTGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACT
ACACATTGAGGATGTTCTGCATTGGATTCACCAAGAGACTTCCAAATCAG
GTTAAGAGGACTTGCTACGCACAGGCCAGCCAGATTAAGACAGATTCGCC
GCAAGATGAGGGAGATCATGATTTGCTCAGGCAGCATCGTGTGATCTTAA
GGGGCTTTGGTCGAAAAATTCATTGCTGAAATAATGGGAAAAAAAAGATT
GAAAAGGGCAACCTTTAACCATATACCCCTTACAAAAAGGTTTTTCTTCC
CCAAAAGTGAAAAATCTTTGAAAGCTCCTAAATTTGAATCTTTGGGAAAA
GTTGAAGGGAGGGTCCAGGGGAATTACTCCTGAAGGATGTTGGGTTAAAA
AGGAAAAGGCCCGCCTGAAGAACCCCCTTTCCTGAACCCCCAAACTGAAG
TGGGTTATGGGGACTTGGGAAAAAAAAAAAATTTTTTGAAATTTGGTCTT
TATATACCCATACCAATATAAAAAAAATTTTTTTAGGGGCCGTTTTTGGT
TTTTTGTGGGCAGAACACCCCAAAATTCTTTTGTTATTATAGGTTTTATC
AAAATTGTCTTTTTTTACCATTATCA
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