EY683964

Overview
NameEY683964
Unique NameEY683964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length981
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.483e-39
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            VQVV DSSW+ LVI SE PVLV+FWAPWCGPCRMIAP I+ELAKEYAGK+ C+KLNTD+SPN ATKYGIRSIPTVLFFKNGE+K+S+IG
Sbjct:   69 VQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIG 157          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.617e-36
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            V V  + +W+++V+ SE PVLVEFWAPWCGPCRMIAP I+ELAKEY GK+ C K+NTDDSPNIAT YGIRSIPTVL FKNGEKKES+IG
Sbjct:   67 VVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIG 155          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.100e-34
Identity = 65/89 (73.03%), Postives = 79/89 (88.76%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            VQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+ELAKEY+GK+A +KLNTD++P IAT+Y IRSIPTVLFFKNGE+KESIIG
Sbjct:   76 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIG 164          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.129e-34
Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            V V  + +W+ LV++ E PVLVEFWAPWCGPCRMIAP I+ELAK+YAGK+ C K+NTDDSPN+A+ YGIRSIPTVL FK GEKKES+IG
Sbjct:   61 VVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIG 149          

HSP 2 Score: 21.9422 bits (45), Expect = 1.129e-34
Identity = 8/15 (53.33%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  678 RRRASLGAVPKSTLS 722
            ++ + +GAVPKSTL+
Sbjct:  143 KKESVIGAVPKSTLT 157          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.450e-34
Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            V V  + +W+N+VI+ E+PVLVEFWAPWCGPCRMIAP I+ELAK+Y GK+ C K+NTDD PNIA+ YGIRSIPTVL FK+GEKKES+IG
Sbjct:   70 VIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIG 158          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.782e-30
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 2
Query:  428 AVQV--VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            AV+V  ++DS W+  V+ S+ PVLVEFWAPWCGPCRMI P +++LAK++AGK   +K+NTD+SPN A +YGIRS+PTV+ FK GEKK+SIIG
Sbjct:   85 AVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIG 176          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.099e-29
Identity = 53/89 (59.55%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            + +V DS+WE+LV+ ++ PV+V+FWAPWCGPC+MI P + ELA++Y GK+  FKLNTDDSP    KYG+RSIPT++ F  GEKK++IIG
Sbjct:   73 IPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIG 161          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.178e-28
Identity = 51/89 (57.30%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            +QVV DS+W++LV+ +  PV+V+FWAPWCGPC+MI P + +LA+ Y GK+  +KLNTD+SPN   +YG+RSIPT++ F  GEKK++IIG
Sbjct:   82 IQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIG 170          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.009e-28
Identity = 52/93 (55.91%), Postives = 74/93 (79.57%), Query Frame = 2
Query:  431 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGGCSQ 709
            + VV DS+W++LV+ ++ PV V+FWAPWCGPC+MI P + ELA++YAG+   +KLNTD+SP    +YG+RSIPT++ F NGEKK++IIG  S+
Sbjct:   76 IPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSK 168          
BLAST of EY683964 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 2.624e-28
Identity = 53/86 (61.63%), Postives = 72/86 (83.72%), Query Frame = 2
Query:  440 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 697
            V D +++N+V+ S  PVLV+FWAPWCGPCR+IAP ++E+A EY  K+ C KLNTD+SPN+A++YGIRSIPT++ FK G+K E+IIG
Sbjct:   39 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIG 124          
The following BLAST results are available for this feature:
BLAST of EY683964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
TRXM_PEA1.483e-3982.02Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_ORYSJ7.617e-3675.28Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_SPIOL1.100e-3473.03Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_MAIZE1.129e-3471.91Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_WHEAT2.450e-3471.91Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM4_ARATH4.782e-3063.04Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA3.099e-2959.55Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM2_ARATH1.178e-2857.30Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM1_ARATH2.009e-2855.91Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_CHLRE2.624e-2861.63Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-F01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683964 ID=EY683964; Name=EY683964; organism=Citrus sinensis; type=EST; length=981bp
AGAATATCAGTCATCGCCCAAAAGACCAAGGCCACATCTTCTTCTATACT
CCTATCAATACTCTTTTAACTTGCTGTGAACAGACACATACCCAGCAAAA
GAAAAAAGAAAGACAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTA
GCTCAGTGTATAGCACTAGAGCTGGTGTGGTACAATGTTACCAACCATTT
TCATCTGTAAAGAAGATTCATTTGCCGATTAGTAACGGGTTGAATAAATC
CAATTTCTCATTCACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAA
GCAGAAGCAGAAACTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAAT
GAAGGTTTGCTCATCTCACCATCCTGACAACCATTTTCCCAGGTAAAAGT
GTTTTTTAACATATGTTTTTGCTGTATGCAGTTCAAGTGGTGACAGATTC
AAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGT
TTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAG
GAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACAC
CGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAA
CTGTGCTCTTCTTCAAAAATGGAGAGAAGAAGGAGAGCATCATTGGGGGC
TGTTCCCAAATCTACTTTGTCCTTCTACTTTAAATAAATAGGTAGAAAGG
AATGGCCAAAAATCACATTTTACCATGTTGGGAAGGAATGGACATTATAA
TTCCAAGTTTTATGTTTCATTTTCCAAAAGGAAAAAAACCCCTTTCCCTT
TCAAGGGGGAAAATTTCCTCCAAGAAAGGTTGAAATTTTTTCTCTGGAAA
AGGGAACCAAACCTCCTTTTTGTCTTTTTGAAGAGAAGGTGGCTTTCCGC
CTTTTTTTTTTTTTTCCCAAAAAAAAAAAAA
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