EY683963

Overview
NameEY683963
Unique NameEY683963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683963 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.058e-18
Identity = 41/89 (46.07%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   24 VDLDGIRDNN---EDIVDQVRAASQTWGFFQFINRGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTREPTRNVRFNSNFDLYHSRTASWR 281
            +DL G+ ++    E +V +V+ A + +GFFQ IN GVPL+++++MI G+ +F++QD EV+K FYTR+ T+ ++++SN DLY S  ASWR
Sbjct:   58 IDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWR 146          
BLAST of EY683963 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.542e-17
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 3
Query:   24 VDLDGIRDN---NEDIVDQVRAASQTWGFFQFINRGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTREPTRNVRFNSNFDLYHSR--TASWR 281
            +DL GI ++   +++IVD+VR AS+ WGFFQ +N G+P +++   ++G  +F EQD EVKKQ+YTR+  + V + SN DLY S    ASWR
Sbjct:   61 IDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWR 151          
BLAST of EY683963 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.542e-17
Identity = 35/74 (47.30%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   60 IVDQVRAASQTWGFFQFINRGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTREPTRNVRFNSNFDLYHSRTASWR 281
            +V+++  A++ WGFFQ IN G+P++++++MI+G+ +F+EQD EVKK FY+R+P   + ++SNFDL+ S  A+WR
Sbjct:   80 LVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWR 153          

HSP 2 Score: 51.9878 bits (123), Expect = 3.616e-11
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 2
Query:  458 PELTLGARRHSDPSFLTILLQDQICGLQVFHENQGIECSP 577
            P+LTLG  +HSD SFLTILLQD I GLQV H+   ++  P
Sbjct:  229 PDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPP 268          

HSP 3 Score: 36.5798 bits (83), Expect = 3.616e-11
Identity = 17/39 (43.59%), Postives = 27/39 (69.23%), Query Frame = 3
Query:  564 LNVHPISGDLVVNIGGFLPGKSNNKLRMVDNRIVANVRG 680
            ++V P+ G LVVN+G  L   +N+K   V++R++ANV G
Sbjct:  264 VDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAG 302          
BLAST of EY683963 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.961e-16
Identity = 67/238 (28.15%), Postives = 116/238 (48.74%), Query Frame = 3
Query:   33 DGIRDNNEDIVDQVRAASQTWGFFQFINRGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTREPTRNVRFNSNFDLYHSRTASWRIRWLFLLQXXXXXXXXXXXXCSIL*PAIMSCDIIFFCTIVHLNLLRYHNGVHKRSHKIGQS*LWELE---GILILHSLQFCCK-------TKSVAFKSFM------KIRGLNVH---------PISGDLVVNIGGFLPGKSNNKLRMVDNRIVAN 671
            D I+ NN   +++++ A+  WGFFQ IN GV L L+++M +GV  F+EQ  EV+K+FY+R+ +R   + SNFDL+ S  A+WR  +   +             C          DI+   +   +NL ++   +   +  +  + L +++   G+L+L      C        T   +  SF+      +I GL V           +SG L++NIG  L   +N+K   +++R++AN
Sbjct:   76 DAIKRNNA--IEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPEICR---------DIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLAN 302          
BLAST of EY683963 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.084e-14
Identity = 63/248 (25.40%), Postives = 121/248 (48.79%), Query Frame = 3
Query:   24 VDLDGIRDNNE---DIVDQVRAASQTWGFFQFINRGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTREP-TRNVRFNSNFDLYHSRTASWRIRWLFLLQXXXXXXXXXXXXCSIL*PAIMSCDIIFFCTIVHLNLLRYHNGVHKRSHKIGQS*LWEL---EGILILHSLQFCCKTKSVAF-------KSFMKI---------------RGLNVHPISGDLVVNIGGFLPGKSNNKLRMVDNRIVANVRG 680
            ++L+G+  N+E   +IV+++  AS+ +GFFQ +N G+P +++ +M++GV KF+EQD ++K+Q+Y+R+   +N  ++SN+ L      +WR     ++             C  +   +   + +    ++   LL    G+ K +H      L E+   EG+++L      C    + F         F+ I               + ++V  I G LV+NI   L   +N+K + V++R++AN  G
Sbjct:   94 INLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIMNSNQPDPQEFPDVCRDI--LMKYSNYVRNLGLILFELLSEALGL-KPNH------LEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVG 332          
BLAST of EY683963 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.705e-13
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:   33 DGIRDNNEDIVDQVRAASQTWGFFQFINRGVPLNLIQEMIEGVHKFNEQDVEVKKQFYTREPTRNVRFNSNFDLYHSRTASWR 281
            D I+  N   ++ ++ A+  WGFFQ IN GV L L+++M +GV  F+EQ  EV+K  Y+R+  R   + SNFDLY +  A+WR
Sbjct:   76 DAIKHKNA--IEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWR 156          
The following BLAST results are available for this feature:
BLAST of EY683963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GSL_ARATH4.058e-1846.07Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCH3_SOLLC1.542e-1747.251-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH1_ARATH1.542e-1747.301-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_ARATH4.961e-1628.151-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO2.084e-1425.40Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH2_ARATH6.705e-1343.371-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-E12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683963 ID=EY683963; Name=EY683963; organism=Citrus sinensis; type=EST; length=960bp
CGGACGCGTGGGCGGACGCGTGGGTTGATCTTGATGGCATCAGAGACAAT
AATGAAGATATTGTTGATCAAGTTCGGGCTGCATCCCAAACATGGGGCTT
TTTCCAATTTATCAATCGTGGGGTTCCCTTAAACCTGATACAAGAGATGA
TTGAAGGAGTTCACAAGTTTAATGAACAAGATGTTGAGGTGAAGAAACAG
TTCTACACACGTGAGCCCACAAGAAATGTTAGATTCAACAGCAACTTTGA
TCTCTATCACTCACGAACCGCAAGTTGGAGGATACGTTGGCTATTTTTAC
TTCAGGTACCAAAAGTGGAAGTCAATGAAGTGCCTGAAGTTTGCAGTATA
TTGTAACCAGCCATCATGAGTTGTGATATCATATTCTTCTGCACAATTGT
TCATCTGAATTTGCTGAGATACCATAATGGAGTACATAAGAGAAGTCACA
AAATTGGCCAGAGCTGACTTTGGGAGCTAGAAGGCATTCTGATCCTTCAT
TCCTTACAATTCTGTTGCAAGACCAAATCTGTGGCCTTCAAGTCTTTCAT
GAAAATCAGGGGATTGAATGTTCACCCTATATCAGGAGACTTGGTGGTAA
ATATAGGGGGCTTTCTCCCAGGTAAATCAAACAATAAGCTCAGAATGGTT
GACAATAGAATTGTGGCCAATGTTCGTGGCCACTGCAAAGGGTTGCATGT
GGAATGACTTTTTCACAGGAAATAGCTACTGAATGGCAAAAACCCCTTTG
GGAACGAATCAGAAATACATTCCAAGCAAAATTGTTTTTCCACCGAATTC
AAAAAAAAAAAATCCACCCATTTTACACAAAAAATTTCTATAGGAAGAAA
AATATAATGAAAAACATATTTATTTAAACAAAAATAAATACAAAAAGAAA
AACCGCAACAGAGTCTTTGGAAAGTGTCAAAACTTTGTTAAAAGCATCCG
ACATTTCTTC
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