EY683952

Overview
NameEY683952
Unique NameEY683952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683952 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.930e-12
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  539 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGQTAAFTIPMIQH 691
            +M  I   EYT+PT IQ Q +PVA+SGRD++G A+TGSG+TAAF  PM+ H
Sbjct:  264 LMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIH 314          

HSP 2 Score: 27.335 bits (59), Expect = 3.930e-12
Identity = 18/57 (31.58%), Postives = 27/57 (47.37%), Query Frame = 3
Query:  273 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMVLSLNLYHWI 443
            N +   + +    P+Q+ E+R +LN+ V   SG+ P P P  SF        L H I
Sbjct:  216 NFYDEHEEITSLTPQQVVELRHKLNLRV---SGAAP-PRPGSSFARFGFDEQLMHQI 268          
BLAST of EY683952 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.930e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  539 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGQTAAFTIPMIQH 691
            +M  I   EYT+PT IQ Q +PVALSGRD++G A+TGSG+TAAF  PM+ H
Sbjct:  264 LMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314          

HSP 2 Score: 26.5646 bits (57), Expect = 3.930e-12
Identity = 17/57 (29.82%), Postives = 27/57 (47.37%), Query Frame = 3
Query:  273 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMVLSLNLYHWI 443
            N +   + +    P+Q+ ++R +LN+ V   SG+ P P P  SF        L H I
Sbjct:  216 NFYNEHEEITNLTPQQLIDLRHKLNLRV---SGAAP-PRPGSSFAHFGFDEQLMHQI 268          
BLAST of EY683952 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.930e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  539 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGQTAAFTIPMIQH 691
            +M  I   EYT+PT IQ Q +PVALSGRD++G A+TGSG+TAAF  PM+ H
Sbjct:  264 LMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314          

HSP 2 Score: 26.5646 bits (57), Expect = 3.930e-12
Identity = 17/57 (29.82%), Postives = 27/57 (47.37%), Query Frame = 3
Query:  273 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMVLSLNLYHWI 443
            N +   + +    P+Q+ ++R +LN+ V   SG+ P P P  SF        L H I
Sbjct:  216 NFYNEHEEITNLTPQQLIDLRHKLNLRV---SGAAP-PRPGSSFAHFGFDEQLMHQI 268          
BLAST of EY683952 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 3.931e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  539 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGQTAAFTIPMIQH 691
            +M  I   EYT+PT IQ Q +PVALSGRD++G A+TGSG+TAAF  PM+ H
Sbjct:  264 LMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314          

HSP 2 Score: 26.5646 bits (57), Expect = 3.931e-12
Identity = 17/57 (29.82%), Postives = 27/57 (47.37%), Query Frame = 3
Query:  273 NNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMVLSLNLYHWI 443
            N +   + +    P+Q+ ++R +LN+ V   SG+ P P P  SF        L H I
Sbjct:  216 NFYNEHEEITNLTPQQLIDLRHKLNLRV---SGAAP-PRPGSSFAHFGFDEQLMHQI 268          
BLAST of EY683952 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.217e-11
Identity = 26/54 (48.15%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  527 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGQTAAFTIPMIQ 688
            LHP ++ +++ ++YT PT IQ +++P  L+GRDL+ CA TGSG+T A++IPM++
Sbjct:  118 LHPYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAYSIPMVE 171          

HSP 2 Score: 24.2534 bits (51), Expect = 3.217e-11
Identity = 12/44 (27.27%), Postives = 23/44 (52.27%), Query Frame = 3
Query:  312 PEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMVLSLNLYHWI 443
            PE+    R +  +++T       +P PI SF D++   NL+ ++
Sbjct:   83 PEEAVVFRNKHKINIT----GEDSPLPIGSFEDLITRFNLHPYL 122          
The following BLAST results are available for this feature:
BLAST of EY683952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DDX42_CHICK3.930e-1258.82ATP-dependent RNA helicase DDX42 OS=Gallus gallus ... [more]
DDX42_PONAB3.930e-1260.78ATP-dependent RNA helicase DDX42 OS=Pongo abelii G... [more]
DDX42_HUMAN3.930e-1260.78ATP-dependent RNA helicase DDX42 OS=Homo sapiens G... [more]
DDX42_MOUSE3.931e-1260.78ATP-dependent RNA helicase DDX42 OS=Mus musculus G... [more]
ROK1_YARLI3.217e-1148.15ATP-dependent RNA helicase ROK1 OS=Yarrowia lipoly... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-E01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683952 ID=EY683952; Name=EY683952; organism=Citrus sinensis; type=EST; length=969bp
CACGCGTCCGCGACCGAGTAATCTATCTCGACAGTGAAATGATGTATGAA
CCACCGCACCGGAGAACCTCGAGCTCCAACTCAGTGAGCAAATTTTCTTC
TTCTTCTTCTTCTTCTTCATCATCATCATCCTCCTCAGTAGTAACCCTAG
ACTCTGACATGACGACGAAGCTCTCTTTCTCTTCAAAATCCCTCCCCAAT
TTCTCCAACTCCAACTCCAATACCACGTGCCGCCGGAGCTACGCTTCTCA
CCCCGTACCCCAACCCGTTTTCAATAATTGGAAACCATCAGACCGCGTTC
TCCGCTTCAATCCTGAACAGATTGAGGAGGTTCGTTTGCGTCTTAACGTG
GATGTTACTGTTGCTTCAGGCTCTGTTCCAGCCCCTGCACCTATTGAATC
TTTTACTGACATGGTATTGTCTTTGAATTTATACCATTGGATAACCCATT
ACTCGGCATTTGATTCGTGACTTTCAATGGTTGTCGGCAGCTTATAAAAT
GTTTGGACTTTGTATATTTTTAGTGTTTACACCCGAGTATCATGAAGGAT
ATTGAGTTTCATGAATATACGAGGCCAACTTCTATTCAGGCTCAGGCTAT
GCCTGTTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGGA
GTGGGCAAACTGCAGCATTCACCATTCCTATGATTCAGCACTGGGTGGGC
TCAAACACCGGTTGGGACTGGGGATGGGACCCTGGGCTTGGGGGTGGGGT
CCCAACCAAAAAGCTTGGCCAAACAAAAAGAAAAAAAAAGGGTAAAGCTC
TTTAGTCGATTTCTTGGATTCCTTCCAAACTGGGGTTATGGGGGGGGGGG
AAAAAAAATTGGGAAGAGACAAAGGGCCGAGACTCCGGAGGGGAGGTGCC
CAGTAGGGGGGGGTAAGTCCGGGGGGAAAAAATTTTGTGGATATTTTGGG
AAAGAAGGGAGAACCTCTT
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