EY683951

Overview
NameEY683951
Unique NameEY683951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 9.156e-55
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 2
Query:   47 CDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQVFEWASIDPPYI 403
            CDILLMPSRFEPCGLNQLYAMRYGTIP+VH+TGGLRDTV++FNP+A+EG GEGTGW+FSPL+ E +L  L+ AI TY EHKSSWEGLMRRGM +DY+WENAAIQYEQVF WA IDPPY+
Sbjct:  522 CDILLMPSRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGIGEGTGWTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQVFTWAFIDPPYV 640          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.727e-53
Identity = 92/119 (77.31%), Postives = 107/119 (89.92%), Query Frame = 2
Query:   47 CDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQVFEWASIDPPYI 403
            CDILLMPSRFEPCGLNQLYAMRYGTIPVVH TGGLRDTVENFNP+A  G+G GTGW F+PLS++SM++ALR A  TYRE+K SWEGLMRRGM ++Y+WENAA+QYEQVF+W  +DPPY+
Sbjct:  533 CDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYV 651          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.237e-51
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 2
Query:   47 CDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQVFEWASIDPPYI 403
            CDILLMPSRFEPCGLNQLYAM+YGT+PVVH TGGLRDTVENFNPFA +G  +GTGW+FSPL+ E ML ALR AI TYREHKSSWEGLM+RGM  D+TW++AA QYEQ+FEWA +D PY+
Sbjct:  523 CDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGE-QGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYV 640          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.237e-51
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 2
Query:   47 CDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQVFEWASIDPPYI 403
            CDILLMPSRFEPCGLNQLYAM+YGT+PVVH TGGLRDTVENFNPFA +G  +GTGW+FSPL+ E ML ALR AI TYREHKSSWEGLM+RGM  D+TW++AA QYEQ+FEWA +D PY+
Sbjct:  523 CDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVENFNPFAEKGE-QGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYV 640          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.580e-49
Identity = 88/119 (73.95%), Postives = 103/119 (86.55%), Query Frame = 2
Query:   47 CDILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQVFEWASIDPPYI 403
            CDILLMPSRFEPCGLNQLYAM+YGT+PVVH TGGLRDTVE FNPF  +G  EGTGW+FSPL+ + ML ALR A+ T+REHK SWEGLM+RGM KD+TW++AA QYEQ+FEWA +D PY+
Sbjct:  529 CDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGE-EGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPYV 646          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.743e-32
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 2
Query:   50 DILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQV 370
            DILLMPSRFEPCGLNQLYAM YGT+PVVHA GGLRDTVE++NP+       G GW+F       ++ AL   + TYR +++SWEGL +RGM +D +W+NAA  YE+V
Sbjct:  639 DILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEE----SGLGWTFEKAEANRLIDALGHCLNTYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEV 741          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.385e-32
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 2
Query:   50 DILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQV 370
            DILLMPSRFEPCGLNQLYAM YGT+PVVH  GGLRDTV+ FNPF       G GW+F       ++ AL   + TY+++K SWEG+  RGM +D +W+NAA QYE+V
Sbjct:  642 DILLMPSRFEPCGLNQLYAMSYGTVPVVHGVGGLRDTVQPFNPF----DESGVGWTFDRAEANKLMAALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEV 744          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.858e-31
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 2
Query:   50 DILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQV 370
            DILLMPSRFEPCGLNQLYAM+YGTIPVVHA GGLRDTV+ F+PF    +  G GW+FS      ++ AL   + TYRE+K SWEG+  R M +D +W+NAA  YE+V
Sbjct:  657 DILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTVQPFDPF----NESGLGWTFSRAEASQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEV 759          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.683e-30
Identity = 63/107 (58.88%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   50 DILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQV 370
            D+LLMPSRFEPCGLNQLYAM YGT+PVVHA GGLRDTV  F+PFA      G GW+F       M+ AL   + TYR +K SW GL  RGM +D +W++AA  YE V
Sbjct:  584 DVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFA----DTGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDV 686          
BLAST of EY683951 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.331e-29
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 2
Query:   50 DILLMPSRFEPCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPFAREGSGEGTGWSFSPLSEESMLTALRFAIRTYREHKSSWEGLMRRGMEKDYTWENAAIQYEQV 370
            D+L+MPSRFEPCGLNQLYAM YGT+PVVHA GGLRDTV  F+PF       G GW+F       ++ AL   + TYR++K SW GL  RGM +D +W++AA  YE+V
Sbjct:  700 DVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVSAFDPF----EDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEV 802          
The following BLAST results are available for this feature:
BLAST of EY683951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
SSY1_SOLTU9.156e-5579.83Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ARATH1.727e-5377.31Soluble starch synthase, chloroplastic/amyloplasti... [more]
SSY1_ORYSJ1.237e-5177.31Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI1.237e-5177.31Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_WHEAT2.580e-4973.95Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
SSY21_ORYSJ3.743e-3258.88Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
SSG2_PEA6.385e-3258.88Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY2_SOLTU1.858e-3160.75Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY22_ORYSJ2.683e-3058.88Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
SSY23_ORYSI1.331e-2956.07Soluble starch synthase 2-3, chloroplastic/amylopl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683951 ID=EY683951; Name=EY683951; organism=Citrus sinensis; type=EST; length=952bp
TGTTTGTTAAGGATACCGGTGACATTGAAGTTTTGGAATGGACAGATGTG
ACATACTGTTGATGCCTTCAAGATTTGAGCCATGTGGACTAAATCAATTG
TATGCAATGAGATACGGAACTATACCAGTAGTTCATGCCACCGGAGGACT
TAGAGATACAGTGGAAAACTTCAATCCATTTGCTCGAGAAGGCAGTGGTG
AAGGTACAGGGTGGTCCTTTTCGCCACTATCAGAAGAAAGCATGTTGACG
GCATTAAGATTTGCAATACGGACTTACAGAGAACACAAGTCATCTTGGGA
AGGATTGATGAGGAGAGGCATGGAAAAGGATTACACGTGGGAAAATGCTG
CGATACAGTATGAACAGGTTTTCGAATGGGCCTCCATTGATCCTCCCTAC
ATTCACTGAGGTAAACAATAAGAAAGAAGTGAAAAAGAAAAGTAAACTGA
AAGATTTAAGTCTTCATACATAGTGGTGCCGGTCCTGGTAAATATCAGCT
TGAACATCGCTTCCAGGAAAAATTTATTCTTGTCAAAATGCTAGGTGGGT
ATGGGTTTTATAGGCATTTTTGGTCTTTTTTTTATTCTTTTTTGAAGCCG
GGCATATTTACAAAATTCCCCAACTGGACCACGTTAACCAAGTTCTTTGT
TTTTTTATTAATATACAGTAAGAAAAACCGGGATTTTATTTTAAAACAAG
GGAAAAAAATCAGTGGATTTTGCTTGGTGCCAGACGAACAAAAAGAAAAA
AGACAAAAGAGAGGGAGACTAAAAAAGAGGGGGGGGGGCGCGCCTAGAGG
AATAAAAAAGATATATAACGCTAAGGATGGCAAAGGTAGGGGCCTTCTTG
AAAATAGGGGCACCAAAAAATACATATACCCTAGGGCGAAGGATTTTATA
GAACCTTACAGTGTCAGGCGAAAAAAATCCGAAGAAATAGAGATAAAAAC
AT
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