EY683948

Overview
NameEY683948
Unique NameEY683948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 4.398e-98
Identity = 179/193 (92.75%), Postives = 188/193 (97.41%), Query Frame = 1
Query:  115 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNK DLTANKVV+ ETAKAFADE+GIPFMETSAK+ATNV+QAFMAMAASIK+RMASQPA+ NARP TVQIRGQP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQP 193          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 357.836 bits (917), Expect = 5.744e-98
Identity = 176/193 (91.19%), Postives = 185/193 (95.85%), Query Frame = 1
Query:  115 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            MN EYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ESFNNVKQWL+EIDRYAS+NVNKLLVGNK DLT N+ + YETAKAFADEIGIPFMETSAK ATNVEQAFMAM+ASIK RMASQPA NNARPPTVQIRGQP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQP 193          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 4.116e-96
Identity = 174/193 (90.16%), Postives = 181/193 (93.78%), Query Frame = 1
Query:  115 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL  N+VVSYE  KA ADEIGIPF+ETSAK ATNVE+AFM MA  IKNRMASQPA+N ++P TVQ+RGQP
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQP 193          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 6.365e-89
Identity = 165/188 (87.77%), Postives = 170/188 (90.43%), Query Frame = 1
Query:  115 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ 678
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK DLT+ KVV Y  AKAFADEIGIPF+ETSAK+ATNVEQAFM MAA IKNRMASQP    A  P V+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVR 188          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.568e-87
Identity = 165/194 (85.05%), Postives = 171/194 (88.14%), Query Frame = 1
Query:  115 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ-IRGQP 693
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNK DLT  KVV Y+ AKAFADEIGIPF+ETSAK+ATNVEQAFM MAA IKNRMASQP       P V+   G+P
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGGPVVRPTEGKP 194          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.957e-86
Identity = 159/193 (82.38%), Postives = 166/193 (86.01%), Query Frame = 1
Query:  115 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK RM     S  +    V I+  P
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTP 193          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 2.957e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  109 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 2.957e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  109 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 2.957e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  109 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
BLAST of EY683948 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 318.931 bits (816), Expect = 2.957e-86
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  109 TTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 693
            ++MN EYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK+ATNVEQ+FM MAA IK RM     +  A    V+I+  P
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 196          
The following BLAST results are available for this feature:
BLAST of EY683948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTM2_MAIZE4.398e-9892.75GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RBD2A_ARATH5.744e-9891.19Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RIC1_ORYSJ4.116e-9690.16Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPTC1_CHLRE6.365e-8987.77GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPTV1_VOLCA1.568e-8785.05GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1_DISOM2.957e-8682.38Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT2.957e-8681.03Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE2.957e-8681.03Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN2.957e-8681.03Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA2.957e-8681.03Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-D09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683948 ID=EY683948; Name=EY683948; organism=Citrus sinensis; type=EST; length=1029bp
CGGACGCGTGGGCGGACGCGTGGGTTGCGATCAATTTTTCTTGCCGGAAA
TTAAAATTTCTCATCATCTCGTCGAAGTTTCTGTGATTCATTCGATCCAA
CGCACGGCACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTTTG
CTCATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACTTTTGAGGTTTGC
TGATGATTCTTATCTGGAAAGCTACATTAGCACCATTGGAGTTGACTTTA
AAATCCGCACTGTGGAACAAGATGGCAAAACCATTAAGCTCCAAATTTGG
GACACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAGCAGCTACTATCG
TGGGGCTCATGGCATCATTGTTGTTTATGATGTCACAGATCAAGAGAGCT
TCAACAATGTAAAGCAATGGCTGAATGAAATTGACCGATATGCAAGTGAA
AATGTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCTCACAGCGAACAA
AGTTGTGTCCTATGAGACAGCCAAGGCATTTGCGGATGAAATTGGGATTC
CTTTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTCGAACAGGCTTTC
ATGGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAGCCAACCTGCCTC
GAACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGACAGCCCTGTCAAC
CAGAAATCTGGTTGGCTGCTCCACTTTAAAAGGGAATAAGTGTTGGGTGA
ATTTCTGATGTTTAACAATGGTCTTTGGTGGAATGAAACACTAGTTTCCC
TCTTCTTTATTGGCTTTTGAATGAGAGGGTTTATTGGTCCTGGATTTGCT
TTTTTTTGGTCGGTTGGTTCCGTTTACTTTAACTAAAAGTTTTCCCTTTC
CTTTTTCAAAGGGTTTTGGGGGTTTTCCAAGAAAAAAAATTTTTGGAAAA
AAAAATTTAGGGAAAAATTTTGGGGGGAAAAAAAGGGGGGTTTTTCTTAT
TTTCTTGGGGCTCGTGCCCCCCCTTACTT
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