EY683945

Overview
NameEY683945
Unique NameEY683945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.800e-65
Identity = 131/187 (70.05%), Postives = 146/187 (78.07%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXX-AFLGXXXXXXXXXXXQQRILSKSFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MAA  STVGAVN A PL +NG           AF G           +    S +FK+V+ E  E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM SGTHYAVMSS+DYISQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:    1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 184          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.800e-65
Identity = 131/187 (70.05%), Postives = 146/187 (78.07%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXX-AFLGXXXXXXXXXXXQQRILSKSFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MAA  STVGAVN A PL +NG           AF G           +    S +FK+V+ E  E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM SGTHYAVMSS+DYISQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:    1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 184          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.699e-62
Identity = 124/186 (66.67%), Postives = 143/186 (76.88%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXXA-FLGXXXXXXXXXXXQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MAA VSTVGA+N A PL +NG          + FLG             +  + SFKV++   E+KQT  DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SS++Y+SQGLRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPNIKVPLILGIWGGKGQGKSFQCELV AKMGI
Sbjct:    1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGI 184          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.219e-62
Identity = 117/185 (63.24%), Postives = 138/185 (74.59%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXXAFLGXXXXXXXXXXXQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MA  VST+G+VN A P  +NG           FLG             ++ S S ++V+  DE+KQT +DRW GLA+D SDDQQDITRGKG VD+LFQAP  SGTH+A+MSS++YIS GLRQY+ DN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I
Sbjct:    1 MATAVSTIGSVNRAPP-NLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRI 184          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.943e-62
Identity = 122/189 (64.55%), Postives = 141/189 (74.60%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXXAFLGXXXXXXXXXXX-QQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MAA +STVGAVN  L L +NG          AF G              ++ S SFK+V+   E +E +QT  DRW GLAYD+SDDQQDITRGKG+VD+LFQAPMD+GTHYAV+SSH Y+S GLRQY+ DN  DG YIAPAF+DK+VVHI KNF+ LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGI
Sbjct:    1 MAASLSTVGAVNRTL-LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGI 188          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 4.943e-62
Identity = 126/189 (66.67%), Postives = 144/189 (76.19%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXXAFLGXXXXXXXXXXX-QQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MAA VSTVGAVN A+ L +NG          AF G              ++ + SFK+V+   E +E +QT++DRW GLAYDISDDQQDITRGKGMVD LFQAPMD+GTHYAVMSS++Y+S GLRQ  LDN  DG YIAPAF+DK+VVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:    1 MAASVSTVGAVNRAI-LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 186          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.077e-60
Identity = 117/185 (63.24%), Postives = 137/185 (74.05%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXXAFLGXXXXXXXXXXXQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MAA VST+GAVN      +N           AFLG             ++++ +FK+V+E DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SS++YIS GLR YS DN +DG YIAPAFMDK+ VHI KNFL LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGI
Sbjct:    1 MAATVSTIGAVNRTT---LNNSNYGGLVPNSAFLGSRLKVSSRFTTS-KMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGI 181          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.543e-60
Identity = 119/189 (62.96%), Postives = 137/189 (72.49%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXXAFLGXXXXXXXXXXXQQ-RILSKSFKVVSEY---DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MA  VST+GAVN   PL +N           AF G              ++ +KS ++V+E    D +KQT  DRW GL  D SDDQQDITRGKGMVD+LFQAP  +GTH+AV+ S++Y+SQGLRQY+LDN LDG YIAPAFMDK+VVHITKNFL LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI
Sbjct:    1 MATSVSTIGAVNKT-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 188          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.944e-58
Identity = 114/189 (60.32%), Postives = 136/189 (71.96%), Query Frame = 2
Query:  104 MAAVVSTVGAVNNALPLKINGXXXXXXXXXXAFLGXXXXXXXXXXXQQ-RILSKSFKVVSEY---DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            MA  VST+GA N A PL +N           AF G              ++ ++S ++ +E    D +KQT  DRW GL  D SDDQQDI RGKGMVD+LFQAP  +GTH+AV+ S++Y+SQGLRQY++DNTLDG YIAP+FMDK+VVHITKNFL LPNIKVPLILG+WGGKGQGKSFQCELVF KMGI
Sbjct:    1 MATSVSTIGAANKA-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGI 188          
BLAST of EY683945 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.376e-56
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 2
Query:  281 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMDSGTHYAVMSSHDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 658
            E D+ KQT  DRW GLAYDISDDQQDITRGKG+VD+LFQAPM  GTH A++SS++YISQGLR+Y  DNT+DGLYIAPAFMDK++VH+ KNF+ LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI
Sbjct:   47 ELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 172          
The following BLAST results are available for this feature:
BLAST of EY683945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA2_LARTR2.800e-6570.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.800e-6570.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.699e-6266.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.219e-6263.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.943e-6264.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.943e-6266.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.077e-6063.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.543e-6062.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.944e-5860.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.376e-5680.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-D06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683945 ID=EY683945; Name=EY683945; organism=Citrus sinensis; type=EST; length=1014bp
CCCACGCGTCCGTGTAAAACAGCAACGTTTTACAGAACCGAATTCAGTTC
CATTTCGTCTTCTTGTCTTAAAATAGCCCGCTTCATCTCAACCGTTGGTT
CAAATGGCTGCTGTTGTCTCCACCGTCGGAGCTGTTAACAACGCATTACC
GTTGAAAATAAATGGATCTAGTAGTTTTTCTTTGGTGCCGAGCTCAGCAT
TTTTGGGGAAGAGCTTGAAGAAGGTGAGCTCGAAGGTCAGCCAGCAGAGG
ATTTTGTCGAAGAGTTTCAAGGTTGTGAGCGAATATGATGAGGAGAAGCA
GACTTCTCAAGACAGATGGGCAGGCCTTGCATACGACATATCAGATGACC
AACAGGACATTACTAGAGGAAAGGGAATGGTGGACACACTCTTCCAAGCT
CCCATGGACAGCGGAACTCACTATGCGGTCATGAGCTCCCATGATTACAT
CAGCCAAGGTCTTCGCCAGTACAGCTTGGACAACACTCTGGATGGTTTAT
ATATTGCCCCTGCATTTATGGATAAGGTCGTTGTTCACATCACCAAGAAT
TTCTTGAATCTCCCAAACATTAAGGTTCCTCTCATATTGGGTATTTGGGG
AGGCAAAGGTCAAGGAAAGTCTTTCCAGTGTGAGCTCGTCTTTGCCAAGA
TGGGAATCAAGTGAATTAATTCCATTCCCGTAACTTTCTATATATTCGTT
TCTTTCTTTTGGAAGAATGAAATTTTATTAATTAATCAAAAATGGATCAC
AAAAATGGCTTCAAAATTTAAATTAATGAAAGGCCAAGTGGAGGCAATAA
AACCTTAAATCCCCCCACTTAAAAAAAAAATATTTTGGGTTCAAAAAAAT
AACCAAGTCCAAAAAATTTTTTGAAAAAACCCTGAAACCTCCTTTTTTTG
TTTCTTGGCCCCCATTTTTTTGTGGGAAATCAAAAAACAAGCCCACCCCC
CCATTTTAAAAAAAAAAAGCCCACCTGGGGGAAAAAAATATTGGAAAAAA
AGAAGAGAAAAAAA
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