EY683934

Overview
NameEY683934
Unique NameEY683934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1021
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 6.976e-72
Identity = 137/174 (78.74%), Postives = 141/174 (81.03%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 523
            SH           NIVPTSTGAAKAVSLV+PQLKGKLNGIALR                KKGI+AEDVNAAFRKAAEGPLKGIL VCDVPLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA KWPG    GSGDPLEDFC+TNPADEECKVYE
Sbjct:  278 SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPADEECKVYE 451          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 3.462e-71
Identity = 134/174 (77.01%), Postives = 141/174 (81.03%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 523
            SH           NIVPTSTGAAKAVSLV+PQLKGKLNGIALR               EKKG+TAEDVN AFRKAA GP+KGIL VCD PLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA+KWPG  A GSGDPLEDFC+TNPADEECKVY+
Sbjct:  274 SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 9.757e-66
Identity = 128/175 (73.14%), Postives = 135/175 (77.14%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPADEECKVYE 523
            SH           NIVPTSTGAAKAVSLV+PQLKGKLNGIALR               EK G+TAEDVN AFRKAA GPLKG+L VCD+PLVSVDFRCSD SSTIDSSLTMVMG DMVKVVAWYDNEWGYSQRVVDLA LVA KWPG+     SGDPLEDFC+ NPADEECK+YE
Sbjct:  277 SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPADEECKLYE 451          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.546e-59
Identity = 114/147 (77.55%), Postives = 117/147 (79.59%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 442
            SH           NIVPTSTGAAKAVSLV+PQLKGKLNGIALR                KKGITAEDVNAAFRKAA+GPLKG+LAVCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA  WPG
Sbjct:  247 SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNWPG 393          

HSP 2 Score: 29.261 bits (64), Expect = 1.546e-59
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 3
Query:  465 THWRISARQTLLMRSAKFMKLKF 533
            +HW   ARQ LLMR+AK M  +F
Sbjct:  402 SHWMSFARQILLMRNAKSMNNRF 424          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 3.486e-47
Identity = 98/145 (67.59%), Postives = 109/145 (75.17%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 436
            SH           NIVPTSTGAAKAV+LV+P LKGKLNGIALR                KK   AE+VNAAFR++A+  LKGIL+VCD PLVS+DFRC+DVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct:  257 SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 400          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.947e-47
Identity = 101/145 (69.66%), Postives = 106/145 (73.10%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 436
            SH           NIVPTSTGAAKAV+LV+P LKGKLNGIALR                KK   AE+VNAAFR AAE  LKGIL VCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:   89 SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 232          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 1.121e-45
Identity = 98/145 (67.59%), Postives = 105/145 (72.41%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 436
            SH           NIVPTSTGAAKAV+LV+P LKGKLNGIALR                KK   AE+VNAAFR +AE  LKGIL VCD PLVSVDFRCSD S+TIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  252 SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 395          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.913e-45
Identity = 97/145 (66.90%), Postives = 105/145 (72.41%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 436
            SH           NIVPTSTGAAKAVSLV+P LKGKLNGIALR                KK + AE+VN AFR AA   L GIL VCDVPLVSVDFRCSDVSSTID+SLTMVMGDDMVKV++WYDNEWGYSQRVVDLA + A +W
Sbjct:  259 SHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTL-AEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQW 402          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.269e-45
Identity = 94/145 (64.83%), Postives = 107/145 (73.79%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 436
            SH           NIVPT+TGAAKAVSLV+P LKGKLNGIALR               EKK   AE+VNAAFR+AA GP+KG+L V D PLVS+DF+C+D S++ID+SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA + A KW
Sbjct:  229 SHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTF-AEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.762e-44
Identity = 94/145 (64.83%), Postives = 105/145 (72.41%), Query Frame = 2
Query:    2 SHXXXXXXXXXXXNIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 436
            SH           NIVPTSTGAAKAV+LV+P LKGKLNGIALR                KK   AE+VN AFR++A   L GIL+VCD PLVSVDFRC+DVSST+DSSLTMVMGDD+VKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  261 SHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNW 404          
The following BLAST results are available for this feature:
BLAST of EY683934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
G3PB_PEA6.976e-7278.74Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH3.462e-7177.01Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL9.757e-6673.14Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC1.546e-5977.55Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SPIOL3.486e-4767.59Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL5.947e-4769.66Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH1.121e-4567.59Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE1.913e-4566.90Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE7.269e-4564.83Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA2.762e-4464.83Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-C07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683934 ID=EY683934; Name=EY683934; organism=Citrus sinensis; type=EST; length=1021bp
TTCACACAGGGACTTGAGGAGAGCGAGAGCTGCAGCGTTGAACATTGTCC
CAACGAGCACAGGTGCCGCCAAGGCTGTTTCTCTTGTGATGCCACAGCTC
AAAGGCAAGCTCAACGGCATTGCGCTCCGTGTGCCAACACCAAATGTTTC
AGTCGTTGACCTTGTTGTGAACGTTGAGAAAAAGGGTATTACAGCAGAAG
ATGTTAATGCAGCCTTCAGAAAGGCTGCTGAGGGGCCACTGAAGGGCATA
TTGGCCGTCTGCGATGTTCCACTGGTGTCGGTGGACTTCCGATGCTCTGA
TGTTTCCTCCACCATTGACTCTTCATTGACCATGGTCATGGGTGATGATA
TGGTCAAGGTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAAAGG
GTTGTCGATTTGGCGCATTTGGTTGCAACCAAGTGGCCAGGCGTGGCTGC
AGGCGGAAGCGGAGACCCATTGGAGGATTTCTGCCAGACAAACCCTGCTG
ATGAGGAGTGCAAAGTTTATGAAGCTTAAATTCTTTCTTAATTGGTTGGC
TAATTAATTACATAGGTTTTTCGCAACCTTTGTCACAAAATGCTTTTATA
TTAATGACAACTGAATGAATTGAACAGACAATTTATCAAATTATATGTCA
AGCCGAATGATCTTGCAAAATCATTGGTCTTTGTTAAAGACACGTAAACA
TGAAAATGGAAAAAACAAAAACAACTGTAAAAACTCTTCTATTCTTAACA
AATTCACACCAAAAGGGTCGTGGTAAGAACCAGCCCACCCCTGGTTCCGC
CGAAAAAACTTTGGGAACCCACTATCTTTTTTAAAAATAAAAATAATAAA
GTAATTTTGGATAAACCAACACATTTTATTTTAAAATTAATTTTTAGGGT
TTAATAAAAAAAAAAATAACCCCCAAGGTCCCCCCCGGGAGAAAAAAAAA
AATTTTTTTGGTAAACATTTTTACAAAAAAAATTAATTTTGTGTCTTAAA
AAAAAAAAAAAAAAAATTTTC
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