EY683918

Overview
NameEY683918
Unique NameEY683918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1024
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.627e-44
Identity = 77/116 (66.38%), Postives = 99/116 (85.34%), Query Frame = 2
Query:  308 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYE 655
            MS+  K +SI IREVWNDNL+ E  LIRD+VDD+PY+AMDTEFPGIV+R +G FKS+++Y+Y+ LK NV++LK+IQLGLTF++E GNLP CGTDKYC+WQFNFREF  D D++A +
Sbjct:    1 MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALD 116          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 8.926e-43
Identity = 77/115 (66.96%), Postives = 98/115 (85.22%), Query Frame = 2
Query:  308 MSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTD-KYCLWQFNFREFSPDEDVYA 649
            MS+  K +SI IREVWNDNLE E +LIR++VDD+P++AMDTEFPGIV R +G FK+++EY+Y+ LK NV++LK+IQLGLTF+DE GNLP CGTD KYC+WQFNFREF  + D+YA
Sbjct:    1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYA 115          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 5.415e-40
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 2
Query:  323 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYE 655
            K +SI IREVW+ NL  EF+LIR+IVD + YIAMDTEFPG+VL+ +  FK +++ NY+ LK NVDLLKLIQ+GLTF+DENGNLP CGTDK+C+WQFNFREF+  ED+YA E
Sbjct:    6 KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASE 116          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.878e-33
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  323 KSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSI------GNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYE 655
            + ++I IREVWN NLE E +LI   +DD+PY+AMDTEFPGIV +++        +    EYNY  LK NV++LKLIQLGLT +DE GNLP CGT+K C+WQFNFREF+   D++A +
Sbjct:   10 EDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALD 126          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.915e-26
Identity = 71/136 (52.21%), Postives = 89/136 (65.44%), Query Frame = 2
Query:  341 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYEFY*TVIPNWH*F*KKQKEGW*RL*KFIELLM 748
            I EVW  NLE E   IR+IV  Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDLLK+IQLGLTFT+E G  P  G +    WQFNF+ F+  ED+Y+ +    +  +   F K ++EG   L  F ELLM
Sbjct:   12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTL-HFAELLM 141          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.915e-26
Identity = 71/136 (52.21%), Postives = 89/136 (65.44%), Query Frame = 2
Query:  341 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYEFY*TVIPNWH*F*KKQKEGW*RL*KFIELLM 748
            I EVW  NLE E   IR+IV  Y YIAMDTEFPG+V+R IG F+SS +Y YQ L+ NVDLLK+IQLGLTFT+E G  P  G +    WQFNF+ F+  ED+Y+ +    +  +   F K ++EG   L  F ELLM
Sbjct:   12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTL-HFAELLM 141          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.885e-25
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 2
Query:  305 NMSILPKSESIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKY--CLWQFNFREFSPDEDVYA 649
            N  + P   ++  REVW +NLE EF LI +I+DDYP+I+MDTEFPG++ +S   F +  +  Y  LK NVD L LIQ+GLT +D NGNLP  G D +   +W+FNFR+F    D +A
Sbjct:    7 NRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHA 122          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.921e-25
Identity = 81/195 (41.54%), Postives = 110/195 (56.41%), Query Frame = 2
Query:  332 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYEFY*TVIPNWH*F*KKQKEGW*RL*KFIELLMVVWDWG*MIVGLGGTFSYRKMDFGYLA*IGRIGKGFAWRTEAGFFFELVPKMYFPL 916
            S  I EVW  NLE E   IR +   + YIAMDTEFPG+V R IG F+S+++Y YQ L+ NVDLLK+IQLGLTF +E G  P  GT     WQFNF+ F+  ED+YA +    +  +   F K ++EG   +  F ELLM       +  G+     +   DFGYL    +I        E   FFE++ +++FP+
Sbjct:    9 SQRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETM-YFAELLMT--SGVVLCEGVKWLSFHSGYDFGYLI---KILSNSKLPDEEVDFFEIL-RLFFPI 191          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.921e-25
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = 2
Query:  341 IREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYE 655
            IR+VW+ NL+ E +LI  +++ YP ++MDTEFPG+V R +G FKSS +Y+YQ L+ NVD LK+IQ+GL  +DE GN P     + C WQFNF  F+  +D+YA E
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPE 121          
BLAST of EY683918 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.096e-24
Identity = 80/195 (41.03%), Postives = 110/195 (56.41%), Query Frame = 2
Query:  332 SIHIREVWNDNLEHEFSLIRDIVDDYPYIAMDTEFPGIVLRSIGNFKSSSEYNYQNLKVNVDLLKLIQLGLTFTDENGNLPKCGTDKYCLWQFNFREFSPDEDVYAYEFY*TVIPNWH*F*KKQKEGW*RL*KFIELLMVVWDWG*MIVGLGGTFSYRKMDFGYLA*IGRIGKGFAWRTEAGFFFELVPKMYFPL 916
            S  I EVW  NL+ E   IR ++  Y Y+AMDTEFPG+V R IG F+S+++Y YQ L+ NVDLLK+IQLGLTF +E G  P  GT     WQFNF+ F+  ED+YA +    +  +   F K ++EG      F ELLM       +  G+     +   DFGYL    +I        E   FFE++ +++FP+
Sbjct:    9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGI-ETQYFAELLMT--SGVVLCEGVKWLSFHSGYDFGYLI---KILTNSNLPEEELDFFEIL-RLFFPV 191          
The following BLAST results are available for this feature:
BLAST of EY683918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CAF1F_ARATH1.627e-4466.38Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1G_ARATH8.926e-4366.96Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH5.415e-4067.57Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH2.878e-3355.56Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT8_MOUSE9.915e-2652.21CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN9.915e-2652.21CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CAF1I_ARATH2.885e-2548.72Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CNOT7_DANRE4.921e-2541.54CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CAF1_SCHPO4.921e-2551.43Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_MOUSE1.096e-2441.03CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-B03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683918 ID=EY683918; Name=EY683918; organism=Citrus sinensis; type=EST; length=1024bp
CCACGCGTCCGTGTAAACTCGGGGAGGTTTTTAACAGCTTTGGTCCGAAA
AGCTCCTTCCTCAGTCTTTCCTTTTATAGAAAATTAAAAAAAAAACCCCA
AAAATAAACTTTCCTTTGACTCTCAATAACGATAAACCCCGCTTGTTTCT
TGAGATAATTTCAGATTTTTCCCGAGGAAGAACCCCAGAAAGTACCATTA
ACGCGGACAGTTCTCCAATCCAGCAATTTCCTATCTCCTAAAATTTAAGG
TTTTGGGTTTTTATCAGCTTATGAATTACTTGTGTCTTGTGAGGATAAGA
AAGTAATATGTCGATTTTGCCAAAAAGCGAATCGATTCATATTCGGGAAG
TATGGAATGATAATCTTGAGCATGAATTTAGTTTAATTCGGGATATCGTT
GATGATTACCCTTACATTGCCATGGACACTGAGTTCCCAGGTATCGTTTT
ACGTTCAATAGGGAATTTCAAGAGTAGCTCTGAGTATAATTACCAAAACT
TGAAAGTCAATGTCGATCTCTTGAAGTTAATTCAGTTAGGCCTTACATTT
ACTGACGAGAATGGGAATTTACCCAAGTGCGGGACTGATAAGTACTGTCT
GTGGCAATTCAATTTTCGTGAGTTCAGCCCTGATGAAGATGTGTATGCTT
ATGAATTCTATTAAACTGTTATCCCGAATTGGCATTGATTTTAAAAAAAA
CAAAAAGAAGGGTGGTGAAGGCTATGAAAATTTATTGAGCTTTTGATGGT
CGTCTGGGATTGGGGTTGAATGATAGTGGGGCTTGGGGGAACATTTTCAT
ACCGGAAAATGGATTTTGGGTACCTGGCCTAAATTGGTAGGATTGGAAAG
GGTTTCGCCTGGAGAACCGAAGCCGGGTTTTTTTTTGAGTTGGTTCCAAA
AATGTATTTTCCCTTACCCCTTATTTAAAAATCCCAAACCCTTCCGGAAA
AAAATATTTCGGCATATAACACTCTCACTGGGGGGGGGGATGGGAATAAA
AAAATCTGTGGCGAAAAAATTTGG
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