EY683914

Overview
NameEY683914
Unique NameEY683914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.463e-47
Identity = 100/127 (78.74%), Postives = 107/127 (84.25%), Query Frame = 1
Query:  112 LITGKTTINNNSDKDKKKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            LI GK +  ++ DKDKKKP++RSSRAGLQFPVGRVHRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct:    9 LIMGKPS-GSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.085e-46
Identity = 99/129 (76.74%), Postives = 106/129 (82.17%), Query Frame = 1
Query:  112 LITGKTTINNNSDKDK--KKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            L+  KTT   +++KDK  K PVSRSSRAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct:    9 LLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.085e-46
Identity = 96/128 (75.00%), Postives = 105/128 (82.03%), Query Frame = 1
Query:  112 LITGKT-TINNNSDKDKKKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            L+  KT   N + DKDKKKP+SRS+RAG+QFPVGR+HR LK               YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    9 LVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.557e-46
Identity = 99/130 (76.15%), Postives = 105/130 (80.77%), Query Frame = 1
Query:  112 LITGKTTINNNSDKDKKK---PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            L+  KTT   ++DKDK K   PVSRSSRAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:    9 LLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.144e-44
Identity = 98/131 (74.81%), Postives = 105/131 (80.15%), Query Frame = 1
Query:  112 LITGKTTINN---NSDKDKKK-PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            L+  KTT      + DKD+KK PVSRSSRAG+QFPVGR+HR LK               YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    9 LLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.265e-43
Identity = 93/128 (72.66%), Postives = 102/128 (79.69%), Query Frame = 1
Query:  112 LITGKTTINN-NSDKDKKKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            L+  KTT    N D  KKK +SRSSRAG+QFPVGR+HR LK+              YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:    9 LLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 3.809e-40
Identity = 86/120 (71.67%), Postives = 93/120 (77.50%), Query Frame = 1
Query:  121 GKTTINNNSDKDKKKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 480
            GK     +S K K K VSRS+RAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK
Sbjct:    4 GKGKAGKDSGKSKSKVVSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 1.108e-39
Identity = 86/117 (73.50%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  142 NSDKDKKKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            +S K K K VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:    9 DSGKTKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.448e-39
Identity = 86/117 (73.50%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  142 NSDKDKKKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            +S K K K VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:    9 DSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125          
BLAST of EY683914 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.448e-39
Identity = 86/117 (73.50%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  142 NSDKDKKKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 492
            +S K K K VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:    9 DSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125          
The following BLAST results are available for this feature:
BLAST of EY683914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AV3_ARATH2.463e-4778.74Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV3_ORYSJ2.085e-4676.74Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV1_ARATH2.085e-4675.00Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV1_ORYSJ3.557e-4676.15Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ1.144e-4474.81Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV2_ARATH1.265e-4372.66Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AV_CAEEL3.809e-4071.67Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AZ_CHICK1.108e-3973.50Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3[more]
H2AZ_SHEEP1.448e-3973.50Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT1.448e-3973.50Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-A11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683914 ID=EY683914; Name=EY683914; organism=Citrus sinensis; type=EST; length=965bp
CCACGCGTCCGATTTAAAGAAGCTGTACCCTTTAAATAATTATTTATTTA
ATTAATTTAAAAGAAGCTGTCTATATAAGGCGGGAAAATGTCGGGCAAAG
GAGCCAAAGGACTGATAACAGGCAAAACCACCATTAACAACAACTCCGAT
AAGGACAAGAAGAAACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTT
CCCAGTGGGAAGGGTCCATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACG
GAAGGGTTGGTGCAACAGCTGCTGTTTATACAGCAGCCATTTTGGAGTAT
CTAACTGCCGAAGTGTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAA
GGTCAAACGTATTACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATG
AAGAACTTGACACTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATT
CCTCATATCCACAAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGT
GACACCATCATCCTCTCGGCTTTGTTTATGTGTGTACTTTTAACTGTGCT
GAAATATCTAAATGAGAAATGATGCCAGAGATGTGTTAATGCTAGGAATC
TGCATTCTTCAATCTTCATTTCATGCAGCGACAAATTGTGGTGCTTGTTT
TTCCCATGTTGGGATTTAAATGTTACTGTTTAATTTTTTAATAATTTTTA
GGAGATCTGGTTTTTTTGTTTTTCAATTCGAAAAATAATGGATTTTATTT
TTTTTTTTAAAAAAAAAAAAAAAAAAGGGGGCCGCCTCCAAAAGGATCCA
AACTTAACTTACCCCTGGGCTGGCCAACCCCAAAACTTTTTTTATAAGGG
GGCACCCTAAAATTTAATTTTCACGGGGCCCGGCCTTTTTTAAAAACACC
CCGGGGAAGGGGGAAAAAAACCCTGGGGGGTTTAACCCCAAAAATTTTAA
ATCCCCCTTTGGGAG
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