EY683904
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2) HSP 1 Score: 248.44 bits (633), Expect = 4.419e-71 Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTN+NFRLLYDT+GRFRLHS++DEEA+FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKG 135 HSP 2 Score: 40.817 bits (94), Expect = 4.419e-71 Identity = 16/23 (69.57%), Postives = 20/23 (86.96%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPINKP 514
+G P +NTY+GRTIRYPDP+ KP
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKP 156
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4) HSP 1 Score: 248.44 bits (633), Expect = 4.419e-71 Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTN+NFRLLYDT+GRFRLHS++DEEA+FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKG 135 HSP 2 Score: 40.817 bits (94), Expect = 4.419e-71 Identity = 16/23 (69.57%), Postives = 20/23 (86.96%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPINKP 514
+G P +NTY+GRTIRYPDP+ KP
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKP 156
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 4.419e-71 Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTN+NFRLLYDT+GRFRLHS++DEEA+FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKG 135 HSP 2 Score: 40.817 bits (94), Expect = 4.419e-71 Identity = 16/23 (69.57%), Postives = 20/23 (86.96%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPINKP 514
+G P +NTY+GRTIRYPDP+ KP
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKP 156
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.697e-70 Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKTN+N+RLLYDT+GRFRLH +RDE+A+FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKG 135 HSP 2 Score: 38.1206 bits (87), Expect = 3.697e-70 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPINK 511
+G P +NTY+GRTIRYPDP+ K
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIK 155
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 6.288e-70 Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++++RNRLKYALTYREVI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTN+NFRLLYDT+GRFRLHSLRDEE++FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKG 135 HSP 2 Score: 38.1206 bits (87), Expect = 6.288e-70 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPINK 511
+G P +NTY+GRTIRYPDP+ K
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIK 155
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3) HSP 1 Score: 243.047 bits (619), Expect = 6.860e-69 Identity = 117/135 (86.67%), Postives = 128/135 (94.81%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKT +N+RLLYDT+GRFRL S++DE+A+FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKG 135 HSP 2 Score: 38.891 bits (89), Expect = 6.860e-69 Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPINK 511
+G P +NTY+GRTIRYPDPI K
Sbjct: 134 KGIPYLNTYDGRTIRYPDPIIK 155
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.164e-67 Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREVIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTN++FRLLYDT+GRF LH++ +E +FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKG 135 HSP 2 Score: 38.1206 bits (87), Expect = 2.164e-67 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPINK 511
+G P +NTY+GRTIRYPDP+ K
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIK 155
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 3.330e-62 Identity = 109/135 (80.74%), Postives = 120/135 (88.89%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREV++ILMQRH+LVDGK+ + DVVSIPKTN+NFRLLYDT+GRFRLHS+RDEE++FKL KV QF QKG
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKG 131 HSP 2 Score: 39.2762 bits (90), Expect = 3.330e-62 Identity = 21/38 (55.26%), Postives = 25/38 (65.79%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDPI---NKPMKPSSMT*KRTD 550
+G P INTY+GRTIRYPDP+ N +K T K TD
Sbjct: 130 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITD 167
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 1.317e-51 Identity = 94/135 (69.63%), Postives = 109/135 (80.74%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV**NQFDQKG 452
MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL REV AILMQRHV VDGKVRTD TYPAGFMDV+++ TN+NFRL+YD +GRF +H + DEEA +KL KV Q +KG
Sbjct: 1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKG 135 HSP 2 Score: 32.3426 bits (72), Expect = 1.317e-51 Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = 2
Query: 446 EGFP*INTYNGRTIRYPDP---INKPMKPSSMT*KRTD 550
+G P + T++GRTIRYPDP +N +K + K TD
Sbjct: 134 KGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITD 171
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 2.238e-51 Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = 3
Query: 48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KTN+ FRL+YD +GRF +H + EEA++KL KV
Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 126 HSP 2 Score: 32.7278 bits (73), Expect = 2.238e-51 Identity = 13/23 (56.52%), Postives = 18/23 (78.26%), Query Frame = 2
Query: 443 PEGFP*INTYNGRTIRYPDPINK 511
P+ P + T++GRTIRYPDP+ K
Sbjct: 133 PKNVPYLVTHDGRTIRYPDPLIK 155 The following BLAST results are available for this feature:
BLAST of EY683904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY683904 ID=EY683904; Name=EY683904; organism=Citrus sinensis; type=EST; length=969bpback to top |