EY683902

Overview
NameEY683902
Unique NameEY683902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIFH_TRISP (Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TN+K   V  S  LS  ++ V NI+ KP +YV + +     +SFGG+  PAA+G L+SIGG+ P  N+  SA +   L KKL +PK+R +I F +  G + GWNG+TF
Sbjct:    6 LNTNIKATDVP-SDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHFVNLNGDDVGWNGTTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIFH_TRITR (Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   15 STNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            STNV  + +     L   +  +A ++GKPE+YV + + G   ++FGGT+ PA +G+L+S+GG+  + N+  SA +   L   L +P +R +I F D +GS+ G+NGSTF
Sbjct:    7 STNVPSENISVD-FLKSTSKLIAGMLGKPESYVAVHINGGQKITFGGTDAPAGFGQLLSLGGVGGEKNRSHSAKLFKHLTDGLGIPGNRMYINFVDMRGSDVGYNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIFH_BRUMA (Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            I TN+  + + +S+ L +A++ VA  +GKPE+YV I + G   M FGG+EDP A   L SIG + P VN   +  +  +L  +L +PK+R +I+F D + S+  +NGSTF
Sbjct:    6 IDTNIPQNSI-SSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVFGGSEDPCAVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEASSMAFNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_XENLA (Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.943e-16
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            I TNV  D V   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  +  +  IL K+L++P +R +I +YD   +N GWNGSTF
Sbjct:    6 IRTNVCRDSVP-DTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIFH_WUCBA (Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            I TN   D + +S+ L +A + V   +GKPE+YV I + G  PM FGG+EDP     L SIG + P VN   +  +  +L  +L +PK+R +I+  D + S+  +NGSTF
Sbjct:    6 IDTNKPQDSI-SSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVFGGSEDPCPVCVLKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEASSMAFNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_XENTR (Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            + TNV  D +   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A   L SIG +    NK  S  +   L K++++P +R +I F+D   +N GWNGSTF
Sbjct:    6 VCTNVCRDSMP-DTLLSDLTKLLAKATGKPAEYIAIHIMPDQMMSFGDSTDPCAVCSLSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHDLNPANVGWNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_CHICK (Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.957e-14
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            I TNV  D V   S+L E T  +A   GKP  Y+ + +     MSFGG+ DP A   L SIG +    NK  +  +  ++ K L V   R +I ++D   +N GWNGSTF
Sbjct:    6 IHTNVCKDAVP-DSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSFGGSTDPCALCSLYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINAANVGWNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_RAT (Macrophage migration inhibitory factor OS=Rattus norvegicus GN=Mif PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    6 VNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_MOUSE (Macrophage migration inhibitory factor OS=Mus musculus GN=Mif PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V     LSE T  +A   GKP  Y+ + +     M+F GT DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    6 VNTNVPRASVP-EGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_MERUN (Macrophage migration inhibitory factor OS=Meriones unguiculatus GN=MIF PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.690e-13
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 3
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+F G+ DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    6 VNTNVPRSSVP-EGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGSSDPCALCSLHSIGKIGGAQNRTYSKLLCGLLADRLRISPDRIYINYYDMNAANVGWNGSTF 114          
The following BLAST results are available for this feature:
BLAST of EY683902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIFH_TRISP1.547e-1942.73Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_TRITR1.108e-1738.53Macrophage migration inhibitory factor homolog OS=... [more]
MIFH_BRUMA5.501e-1740.91Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENLA7.943e-1640.91Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIFH_WUCBA1.355e-1540.00Macrophage migration inhibitory factor homolog OS=... [more]
MIF_XENTR1.498e-1438.18Macrophage migration inhibitory factor OS=Xenopus ... [more]
MIF_CHICK1.957e-1439.09Macrophage migration inhibitory factor OS=Gallus g... [more]
MIF_RAT2.825e-1336.36Macrophage migration inhibitory factor OS=Rattus n... [more]
MIF_MOUSE2.825e-1336.36Macrophage migration inhibitory factor OS=Mus musc... [more]
MIF_MERUN3.690e-1335.45Macrophage migration inhibitory factor OS=Meriones... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-041-H11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683902 ID=EY683902; Name=EY683902; organism=Citrus sinensis; type=EST; length=586bp
CTTGCTTGAACATTTCAACTAACGTCAAACTCGATGGCGTTGACACGTCA
TCCATCCTCTCCGAGGCCACCTCCACTGTCGCCAACATCATCGGCAAACC
CGAGGCCTACGTGATGATTGTGTTGAAGGGATCGGTACCTATGTCGTTTG
GTGGAACTGAGGATCCGGCAGCTTATGGTGAGTTGGTGTCCATTGGTGGC
CTTAACCCTGATGTGAACAAGAAGCTGAGTGCTGCAATTTCTGCAATTCT
TGAAAAGAAGCTGTCGGTACCCAAGTCACGATTCTTCATCAAGTTTTATG
ACACAAAGGGTTCAAACTTTGGATGGAATGGATCCACCTTCTAGATATTA
TTCTCAAAGCATGGCGCCATGAACTCTGACAATTGTCTTATCTATATGGT
GATTACAATCTTTAGAACTATGTTAATAATTGGCTGAATATTGTGTAATT
TCTCCTATGATGTGTTTTCTTCTCGTTGGTGCTAGCCAACAATAATTGTG
GAATAGGAACTGTTTGGTTTATGGAGTAATATTGCATTTGTTAATCTACT
GTTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top