EY683899

Overview
NameEY683899
Unique NameEY683899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1024
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.119e-53
Identity = 111/169 (65.68%), Postives = 126/169 (74.56%), Query Frame = 3
Query:  111 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAK 617
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT KDRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN MDG YIAPAFMDKLVVHITKNF      +    LG  G  KG+ KS      VFAK
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWG-GKGQGKSF-QCELVFAK 181          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.756e-52
Identity = 127/217 (58.53%), Postives = 147/217 (67.74%), Query Frame = 3
Query:  111 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNGQSTQIMKKCRKNLINGKCWENPPNLIKAESPGGGNLKIITKKGK 755
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF      +    LG  G  KG+ KS      VFAK G +  +M      L +G   E P  LI+       +   I KKGK
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSF-QCELVFAKMGINPIMMS--AGELESGNAGE-PAKLIRQRYREAAD---IIKKGK 221          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.756e-52
Identity = 127/217 (58.53%), Postives = 147/217 (67.74%), Query Frame = 3
Query:  111 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNGQSTQIMKKCRKNLINGKCWENPPNLIKAESPGGGNLKIITKKGK 755
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF      +    LG  G  KG+ KS      VFAK G +  +M      L +G   E P  LI+       +   I KKGK
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSF-QCELVFAKMGINPIMMS--AGELESGNAGE-PAKLIRQRYREAAD---IIKKGK 221          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.579e-50
Identity = 122/218 (55.96%), Postives = 142/218 (65.14%), Query Frame = 3
Query:  114 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNGQSTQIMKKCRKNLINGKCWENPPNLIKAESPGGGNLKIITKKGK 755
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNF      +    LG  G  KG+ KS      VFAK G +  +M      L +G   E P  LI+       +L    KKGK
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWG-GKGQGKSF-QCELVFAKMGINPIMMS--AGELESGNAGE-PAKLIRQRYREASDL---IKKGK 225          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 4.400e-50
Identity = 112/174 (64.37%), Postives = 127/174 (72.99%), Query Frame = 3
Query:  114 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNG 623
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT KDRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNF      +    LG  G  KG+ KS      VFAK G
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWG-GKGQGKSF-QCELVFAKMG 185          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 7.025e-48
Identity = 123/230 (53.48%), Postives = 144/230 (62.61%), Query Frame = 3
Query:   96 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNGQSTQIMKKCRKNLINGKCWENPPNLIKAESPGGGNLKIITKKGK 755
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN MDG YIAPAFMDKLVVHITKNF      +    LG  G  KG+ KS      V AK G +  +M      L +G   E P  LI+       +L    KKGK
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWG-GKGQGKSF-QCELVMAKMGINPIMMS--AGELESGNAGE-PAKLIRQRYREAADL---IKKGK 221          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.669e-47
Identity = 107/175 (61.14%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  111 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNG 623
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF      +    LG  G  KG+ KS      VF K G
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWG-GKGQGKSF-QCELVFRKMG 187          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.260e-46
Identity = 105/179 (58.66%), Postives = 121/179 (67.60%), Query Frame = 3
Query:   99 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNG 623
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF      +    LG  G  KG+ KS      VF K G
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWG-GKGQGKSF-QCELVFRKMG 187          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.587e-46
Identity = 114/222 (51.35%), Postives = 137/222 (61.71%), Query Frame = 3
Query:   90 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNGQSTQIMKKCRKNLINGKCWENPPNLIKAESPGGGNLKIITKKGK 755
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT+KD+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF      +    LG  G  KG+ KS      VFAK G +  +M      L +G   E P  LI+       +   I KKGK
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWG-GKGQGKSF-QCELVFAKMGINPIMMS--AGELESGNAGE-PAKLIRQRYREAAD---IIKKGK 218          
BLAST of EY683899 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.269e-45
Identity = 103/177 (58.19%), Postives = 124/177 (70.06%), Query Frame = 3
Query:   99 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFHVPAQHQGSSHLGYIGEAKGKEKSIPNVSFVFAKNG 623
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF      +    LG  G  KG+ KS      VF K G
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWG-GKGQGKSF-QCELVFRKMG 182          
The following BLAST results are available for this feature:
BLAST of EY683899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_MALDO1.119e-5365.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.756e-5258.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.756e-5258.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.579e-5055.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.400e-5064.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH7.025e-4853.48Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.669e-4761.14Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.260e-4658.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA8.587e-4651.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN7.269e-4558.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-041-H08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683899 ID=EY683899; Name=EY683899; organism=Citrus sinensis; type=EST; length=1024bp
CACGCACCCAGCGCATTGCTTCGCTTTCCTTTGCCTGCATTGCAGCGTGA
CCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATGGC
TGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCC
CAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATC
CCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGA
TGAGAACAAGCAGACCAAGAAGGACAGATGGAAGGGCCTTGCCTACGACG
AATCTGATGACCAGCAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCT
CTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTC
TTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGA
TGGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCAC
ATCACCAAGAACTTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCT
TGGGTATATTGGGGAGGCAAAGGGCAAGGAAAAATCCATTCCCAATGTGA
GCTTTGTTTTCGCCAAGAATGGGCAATCAACCCAAATTATGAAGAAATGC
CGGAAAAATTTGATAAATGGGAAATGCTGGGAAAACCCGCCTAATTTGAT
TAAGGCAGAAAGTCCCGGGGGAGGGAACCTGAAAATTATAACAAAAAAGG
GGAAAAATGGTCCTTGCCTCCATGAATTCATGAATCCTTAAAAGCTAGAA
ACTTGGGTTCAAAATGGGGGGGGACCCACCACCCCTAAAAAAAAATTTTA
CACAAAACAAAAAGGGAAAAAACACCCACACACATTCATTAAAACTTTTG
TTGGAAAAAAAACCCACAACTTTGTTGATCCCCAAAATTTCACCCTTGGT
AAAAGAGTAAAAACAAATAGAGAGAGGAAGAAAGAAAACCCCACACCGCG
GAGAGCGCCCGCAACAATANTAAA
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