EY683898

Overview
NameEY683898
Unique NameEY683898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length997
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3)

HSP 1 Score: 376.711 bits (966), Expect = 1.147e-103
Identity = 202/283 (71.38%), Postives = 223/283 (78.80%), Query Frame = 2
Query:    2 HANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWGQKSSGQSSTGLNQPESVILSKETNFFQPIFARTCLALSIKEQARKGVLGFLPNS*KKQWGA*IRKLGTSKNTTKKNSPSLG 850
            HANRY RYI PVLSVQMDF+VRVFVR+YTSASAMK+TPLKLSYVYQCIGCDSFHLQ VGR+   KNNSVRYLPG GPVVPQ C+ CGKK+NMGGPIWS  IHDQEWVNSIL  VKSMKDRYPAYDRI AVLTTISEELPDVPLFLSLH+L +TLKCTSPSA +FRSAVINA YRVSG+HVNPLG+KTDAPM +IWDIMRCW  K+          P SVILSKE +  Q  F+R   +LS K QA+K V  FLPN  +K WG    K+   +  T K+   LG
Sbjct:  269 HANRYKRYIVPVLSVQMDFYVRVFVRVYTSASAMKNTPLKLSYVYQCIGCDSFHLQSVGRSLP-KNNSVRYLPGVGPVVPQDCTHCGKKYNMGGPIWSAPIHDQEWVNSILNGVKSMKDRYPAYDRICAVLTTISEELPDVPLFLSLHSLSATLKCTSPSAALFRSAVINAKYRVSGSHVNPLGIKTDAPMEIIWDIMRCW-VKNHPIKPQSPEHPGSVILSKEPS-HQADFSRHVGSLS-KAQAKK-VARFLPNP-EKHWGP---KIRAGRTITSKHVSLLG 542          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM2_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3)

HSP 1 Score: 375.555 bits (963), Expect = 2.554e-103
Identity = 200/283 (70.67%), Postives = 222/283 (78.45%), Query Frame = 2
Query:    2 HANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWGQKSSGQSSTGLNQPESVILSKETNFFQPIFARTCLALSIKEQARKGVLGFLPNS*KKQWGA*IRKLGTSKNTTKKNSPSLG 850
            HANRY RYI PVLSVQMDF+VRVFVR+YTSASAMK+TPLKLSYVYQCIGCDSFHLQPVGR+   KNNSVRYLP  GPVV Q C+ CGKK+NMGGPIWS  +HD EWV SIL  VKSMKDRYPAYDRISAVLTT+SEEL DVPLFLSLHNLC+TLKC SPSA MFRSAVINA YR+SGTHVNPLG+KTDAPM VIWDIMRCW  K+    +    QP SVILSKE +  +  F+R   +LS K QA+K V  FLPN  +K WG    KL   +  T K+   +G
Sbjct:  269 HANRYKRYIVPVLSVQMDFYVRVFVRVYTSASAMKNTPLKLSYVYQCIGCDSFHLQPVGRSLP-KNNSVRYLPAIGPVVKQDCNHCGKKYNMGGPIWSAPMHDPEWVTSILNSVKSMKDRYPAYDRISAVLTTVSEELLDVPLFLSLHNLCATLKCISPSAAMFRSAVINANYRISGTHVNPLGMKTDAPMEVIWDIMRCW-VKNHPIKAQSPEQPGSVILSKEPS-HEVDFSRHIGSLS-KAQAKK-VARFLPNP-EKHWGP---KLRAGRQITSKHVSLIG 542          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_MOUSE (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Mus musculus GN=Trmt1 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.377e-48
Identity = 86/201 (42.79%), Postives = 132/201 (65.67%), Query Frame = 2
Query:    2 HANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCW 604
            HAN Y RYI P+LS+  DF++RVFVR++T  + +KS+  K + V+QC+GC +F+LQ +G+ + +    +++    GP V   C  CG++  +GGP+W+  IHD ++V  +L  V +   R+    RI  VL+ ++EELPDVPL+ +L  L ST+ C +P  +  RSA+++AG+RVS +H     +KTDAP   +WDIMRCW
Sbjct:  301 HANCYQRYIVPLLSISADFYIRVFVRVFTGQAKVKSSASKQALVFQCVGCGAFYLQRLGKASGDPGGRIKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLDAVTTNPGRFHTSMRIQGVLSVVTEELPDVPLYYTLDQLSSTIHCNTPRLLQLRSALLHAGFRVSLSHACKNAVKTDAPPEALWDIMRCW 501          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_HUMAN (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.522e-47
Identity = 85/200 (42.50%), Postives = 131/200 (65.50%), Query Frame = 2
Query:    5 ANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCW 604
            AN Y R++ P+LS+  DF+VRVFVR++T  + +K++  K + V+QC+GC +FHLQ +G+ +   +   ++    GP V   C  CG++  +GGP+W+  IHD ++V  +L  V +   R+   +RI  VL+ I+EELPDVPL+ +L  L ST+ C +PS +  RSA+++A +RVS +H     +KTDAP   +WDIMRCW
Sbjct:  303 ANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLGKASGVPSGRAKFSAACGPPVTPECEHCGQRHQLGGPMWAEPIHDLDFVGRVLEAVSANPGRFHTSERIRGVLSVITEELPDVPLYYTLDQLSSTIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCW 502          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_DROME (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Drosophila melanogaster GN=CG6388 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.414e-45
Identity = 100/268 (37.31%), Postives = 147/268 (54.85%), Query Frame = 2
Query:    2 HANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKN----NSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEV-KSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWGQKSSGQSSTGL-NQPESVILSKETNFFQPIFARTCLALSIKEQARKGVLGFLPNS*KKQWG 787
            HANRY +YIEP+LS+  DF++R+FVR+Y   +  K +  K S++YQC GC++F LQP+G T  N        +++    GP V   C  CG + ++GGPIWS  IH+ E+V  +L  V ++         RI  VL+ + EEL DVPL+ +   LC  LK      + FRSA+++AGYRVS +H +   LKT+AP  V+WDI+R W ++        +   P + ILSKE      ++    L      ++RK  L     +    WG
Sbjct:  249 HANRYGKYIEPLLSISADFYIRIFVRVYVGQAQCKLSMSKQSWIYQCTGCETFTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGHRHHLGGPIWSAPIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLSMVQEELQDVPLYYTPDKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVLWDILRSWSKRHPVNPERMIPGSPLAAILSKECT---AVYEFDELHPEANPKSRKSALSRFQENPTPHWG 513          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_SCHPO (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Schizosaccharomyces pombe GN=trm1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.087e-37
Identity = 76/202 (37.62%), Postives = 116/202 (57.43%), Query Frame = 2
Query:    5 ANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNK-NNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDR-YPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCW 604
            A +Y R I+P+LS+ +DF+ RVFV+I      +K+   +   +Y C GC SF  QP+G+T+  +   + ++    GP V   C  CG   ++GGP+W G +HD E++  +    + +    Y    RI  +L    EELPDVP +  L  +CS L+  SP   +F SA++NAGYRVSG+H     +KT+AP   +WD++R W
Sbjct:  272 AAKYGRAIKPLLSLSIDFYFRVFVQIKAKPVLVKNLQSQSLLIYHCSGCGSFAEQPLGKTSPGRLPGTTKFSNASGPPVSANCEHCGYVHHVGGPLWGGPLHDAEFLKKMRAIAEDLDPEVYGTKRRILGMLALADEELPDVPFYFVLSQICSVLRSQSPPQNIFVSALLNAGYRVSGSHAKSNAIKTNAPWSFVWDVLRSW 473          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_CAEEL (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Caenorhabditis elegans GN=trm-1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.449e-31
Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 2
Query:    5 ANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVP---QLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKD--RYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMR 598
            ANRY RYIEP++S+ +DF+VRVFVR++T A   K +  K+  V  C GC S     + +       S   +P     +      C  C    +  GPI+   IH + +V S+L  +KS  +  R   + R+  VLT ++EEL DV L+   + + + +K + P +   RSA++NAG++VSG+H NP  +KT+APM ++WDI R
Sbjct:  241 ANRYTRYIEPLVSISVDFYVRVFVRVHTGAFQAKQSGTKVGTVLVCSGCHSMEPLVLLKRGEGNQQSKYSIPTVRHSISGPGNRCIHCLLPLHQIGPIYLAPIHSKPFVTSLLERLKSTPEAERLGTHGRLQGVLTMVNEELDDV-LYYEHNQMANVVKVSVPKSQSVRSAILNAGFKVSGSHCNPRAIKTNAPMHLLWDIYR 442          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_YEAST (N(2),N(2)-dimethylguanosine tRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=TRM1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.853e-28
Identity = 70/229 (30.57%), Postives = 113/229 (49.34%), Query Frame = 2
Query:    5 ANRYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTAS----NKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSIL----GEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWGQKSSGQSSTGLNQPESVILS 667
            A +Y + +EP+LS+ +DF+VRVFV++ TS   +K+        Y C  C S+H QP+GR +     N     +Y    GP V   C  C   +++ GP+++G +H++E++  +L     E +   D Y    RI  +L+    EL D P + S +++ S +K   P      + + + G+  S TH  P  LKT+AP   IW +M+    +    S    N     ILS
Sbjct:  285 AAKYKKTVEPLLSLSIDFYVRVFVKVKTSPIEVKNVMSSTMTTYHCSRCGSYHNQPLGRISQREGRNNKTFTKYSVAQGPPVDTKCKFCEGTYHLAGPMYAGPLHNKEFIEEVLRINKEEHRDQDDTYGTRKRIEGMLSLAKNELSDSPFYFSPNHIASVIKLQVPPLKKVVAGLGSLGFECSLTHAQPSSLKTNAPWDAIWYVMQKCDDEKKDLSKMNPNTTGYKILS 513          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_METTH (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Methanobacterium thermoautotrophicum GN=trm1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.470e-15
Identity = 52/195 (26.67%), Postives = 95/195 (48.72%), Query Frame = 2
Query:   11 RYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIM 595
            RY +    +LS     ++R+++R+   A     +   + ++  C  C   H + V               GF P+  + C  CG + ++ GP+W G I D +++  ++GEV++ K+   A D +  +L    +E    P F  +H +CS L  ++P        +  AG+RVS TH+ P G++TDA +G I +++
Sbjct:  199 RYRKAASVLLSHSSQHYMRLYIRVRRGARRADESIRNIGFMLHCFRC--LHHEHVN--------------GFAPLKRE-CPHCGAEMDVAGPLWVGDIQDSKFIGEMIGEVEN-KELNTAGD-VLKLLKGCLDEAGMPPGFYDIHEVCSKLGRSAPPLRDVMDGLEAAGFRVSRTHIRPTGIRTDAGIGEIEEVL 374          
BLAST of EY683898 vs. ExPASy Swiss-Prot
Match: TRM1_METS3 (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=trm1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.942e-14
Identity = 45/196 (22.96%), Postives = 88/196 (44.90%), Query Frame = 2
Query:   11 RYPRYIEPVLSVQMDFHVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMR 598
            +Y + IE  LS   + ++R+++ +   +         + Y+  C  C              + N      G     P +C +CG+K    GP+W G I ++E+++ ++  V+S   +    + +  +L +   E      F  +H +C  LK ++P   +    +   G+    TH NPLG+KT+AP+  I +I++
Sbjct:  205 KYSKSIEVKLSHSTEHYMRLYIEVKKGSKKSDECLKNIGYLSHCKHC-----------LYREENK-----GLATSTPDICPECGEKLIQAGPLWLGEIQNEEFISKMI--VESENKKLNTKEDVLKLLESCRIEAKSPATFYDVHKICKILKISAPKLDLVFGNLEKEGFEAVKTHFNPLGIKTNAPLKKIKEIIK 382          
The following BLAST results are available for this feature:
BLAST of EY683898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TRM1_ARATH1.147e-10371.38Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM2_ARATH2.554e-10370.67Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_MOUSE1.377e-4842.79N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_HUMAN1.522e-4742.50N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_DROME5.414e-4537.31Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_SCHPO7.087e-3737.62N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_CAEEL4.449e-3136.95N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_YEAST7.853e-2830.57N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_METTH4.470e-1526.67N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_METS34.942e-1422.96N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-041-H07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683898 ID=EY683898; Name=EY683898; organism=Citrus sinensis; type=EST; length=997bp
CCATGCAAATCGTTACCCCCGATACATTGAACCTGTGTTATCTGTCCAGA
TGGACTTTCACGTTCGAGTTTTTGTTCGTATATACACTTCTGCAAGTGCA
ATGAAAAGTACTCCCCTCAAGCTCTCATATGTATACCAGTGCATTGGTTG
TGATTCTTTCCATCTACAGCCCGTTGGGAGGACTGCCTCCAACAAGAATA
ACAGTGTAAGATATCTACCGGGGTTCGGTCCTGTTGTTCCTCAATTGTGC
AGTGACTGTGGGAAAAAATTCAATATGGGGGGGCCTATATGGTCTGGTCG
CATCCATGATCAGGAATGGGTAAATTCCATCCTAGGTGAAGTGAAGTCTA
TGAAGGACCGGTATCCTGCCTATGATCGCATCTCTGCTGTATTGACAACA
ATTTCGGAGGAATTGCCTGACGTTCCTCTCTTTTTGAGTCTGCACAACCT
CTGTTCAACATTAAAATGCACTTCCCCTTCGGCAGTAATGTTCCGATCTG
CTGTGATCAATGCAGGATATCGTGTTTCTGGAACCCACGTGAATCCATTA
GGGCTCAAAACCGATGCACCCATGGGTGTCATATGGGACATAATGCGTTG
CTGGGGTCAAAAATCATCCGGTCAAAGCTCAACTGGCCTGAATCAACCGG
AAAGTGTAATACTAAGCAAGGAAACCAACTTCTTTCAGCCAATTTTTGCT
CGAACTTGTTTGGCTCTCTCAATAAAGGAACAAGCCAGAAAAGGTGTGCT
CGGTTTCCTTCCAAATTCCTAAAAAAAGCAATGGGGGGCATAAATCCGGA
AACTTGGGACGTCAAAAAACACAACAAAAAAAAATTCTCCATCTCTCGGG
GGGAAAAAAGCTTGGTATAGGTACAAATTTTAACCCCTTGTGAGAATGAG
GTGGAAAAGACACAGTGAAAGCACCCGGCCGCTCACTAAAGAAATGAGAA
ATGATACACACGCACTAAGAAAAAAAATAAGGAAAGGTATTTTGCAA
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