EY745469

Overview
NameEY745469
Unique NameEY745469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY745469 vs. ExPASy Swiss-Prot
Match: SF3A3_MOUSE (Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.074e-45
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 2
Query:   92 IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGTIYNKKTYHRL 448
            IYNP  LP+GWDGKPIPYWLYKLHGL   + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW K++ ++   +W+P+ EEEYED  G + NKKTY  L
Sbjct:  377 IYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDL 495          
BLAST of EY745469 vs. ExPASy Swiss-Prot
Match: SF3A3_HUMAN (Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.074e-45
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 2
Query:   92 IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGTIYNKKTYHRL 448
            IYNP  LP+GWDGKPIPYWLYKLHGL   + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW K++ ++   +W+P+ EEEYED  G + NKKTY  L
Sbjct:  377 IYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDL 495          
BLAST of EY745469 vs. ExPASy Swiss-Prot
Match: NOI_DROME (Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.445e-41
Identity = 69/118 (58.47%), Postives = 89/118 (75.42%), Query Frame = 2
Query:   95 YNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGTIYNKKTYHRL 448
            YNP  LP+GWDGKPIPYWLYKLHGL   + CEICGN++Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW+K++ ++   +W  + EEE+ED  G + N+KT+  L
Sbjct:  380 YNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAITLWEKLKSQKQSERWVADQEEEFEDSLGNVVNRKTFEDL 497          
BLAST of EY745469 vs. ExPASy Swiss-Prot
Match: SAP61_SCHPO (CWF complex protein sap61 OS=Schizosaccharomyces pombe GN=sap61 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.344e-36
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 2
Query:   92 IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGGIKWRPELEEEYEDKEGTIYNKKTYHRL 448
            IYNPLKLP+GWDGKPIP+WL+KLHGLG+EF CEICGNY Y GR+AF++HF E RH +G++CLGI  +  FN+ITSI+EA +LW+K +      +       E ED EG + ++K Y+ L
Sbjct:  368 IYNPLKLPLGWDGKPIPFWLWKLHGLGKEFPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQITSIDEALQLWQKYKVDSKKRETTMASLNEMEDDEGNVMSEKVYNDL 486          
BLAST of EY745469 vs. ExPASy Swiss-Prot
Match: PRP9_YEAST (Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae GN=PRP9 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.361e-28
Identity = 62/127 (48.82%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  110 LPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQ--------------GGIKWRPELEEEYEDKEGTIYNKKTYHRL 448
            +P+G DG P+PYWLYKLHGL +E++CEIC N  Y GRR FERHF E RH + +RCLGI  +  F  IT I+EA+ELWK +Q +                 +K   ELE E ED+EG + +KK Y  L
Sbjct:  398 MPLGPDGLPMPYWLYKLHGLDREYRCEICSNKVYNGRRTFERHFNEERHIYHLRCLGIEPSSVFKGITKIKEAQELWKNMQGQSQLTSIAAVPPKPNPSQLKVPTELELEEEDEEGNVMSKKVYDEL 524          
The following BLAST results are available for this feature:
BLAST of EY745469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SF3A3_MOUSE5.074e-4563.03Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf... [more]
SF3A3_HUMAN5.074e-4563.03Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF... [more]
NOI_DROME4.445e-4158.47Splicing factor 3A subunit 3 OS=Drosophila melanog... [more]
SAP61_SCHPO7.344e-3656.30CWF complex protein sap61 OS=Schizosaccharomyces p... [more]
PRP9_YEAST7.361e-2848.82Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-012-H12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY745469 ID=EY745469; Name=EY745469; organism=Citrus sinensis; type=EST; length=806bp
AGAACAGGCACTGACTCACGATTAAATGGAAGCAGAACGAGAAGAAGAGG
AGACACAAGTTGACACTGAAAGTGACGATGAAGAGCAGCAGATTTACAAT
CCCCTCAAATTGCCAATGGGTTGGGATGGGAAGCCTATACCCTACTGGCT
ATACAAGCTTCATGGTCTTGGTCAGGAGTTTAAGTGTGAGATATGCGGAA
ACTACAGCTATTGGGGCCGTAGGGCGTTTGAGCGGCATTTTAAGGAATGG
CGCCATCAGCATGGGATGCGTTGCCTTGGTATTCCAAACACCAAAAACTT
CAATGAGATCACATCAATTGAGGAAGCCAAAGAACTGTGGAAGAAGATAC
AAGAAAGGCAAGGAGGGATCAAGTGGCGCCCAGAGCTTGAAGAAGAATAT
GAAGACAAAGAGGGTACCATCTACAATAAGAAAACATATCACCGACTTGC
ACCGCCCAGGACTGATTTAAGAAATTAATGGTTATCTTTGAGAAGCCATT
ACTGGGCTCGACTTTCATTTCACCAATTGCTTGAGAGACTTGGATGAAAT
CACAAAGCAACGAAAAGGGCTCAGACATACTACCTGGCTAGACAAACAAT
GACAAACACTGGGGTGGGACCCCAATCAGAACCACCCGAGGCCGACAGAC
TCCAAAGGGCATAACGTAAAACACAAAACCAAAAGAACAAGTCAAACACA
CAAACACACCACAATCAAAGCTCTAAAGAACCAGAACCGCCCGCCCAGCA
CGCAGAGCCACAGGGACACAACCGATCAGTAAGAGCTAAAGGAGCCGAGA
CACCCA
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