EY709603

Overview
NameEY709603
Unique NameEY709603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY709603 vs. ExPASy Swiss-Prot
Match: PAP8_ARATH (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.832e-31
Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 1 
Query:    4 RVRASFSASLPCK----RSPRTALKIVRAVSISSPDLRTGPDDLVASILSEVNQSDGGVSLAREEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGWLQKCIWPACLRRKEMIRAGEGPDLGGTRVPSPLWVFL 426
            R+      S+P K    RS R  L +V +VS  + +LRTGPDDL++++LS+V  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+W+VVYCS PTSPGG  +  I     + KEMI+A + PD+   +V    + FL
Sbjct:   26 RLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAPNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGDWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFL 169
The following BLAST results are available for this feature:
BLAST of EY709603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP8_ARATH2.832e-3151.03Probable plastid-lipid-associated protein 8, chlor... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-048-B02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY709603 ID=EY709603; Name=EY709603; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGCGCAAGTTTTTCAGCTTCACTTCCTTGCAAAAGAAGTCC
TCGCACCGCACTGAAAATCGTCAGGGCTGTTTCCATCTCCAGCCCAGATC
TGCGAACCGGTCCCGACGATTTGGTTGCTTCTATCCTCTCCGAGGTGAAC
CAATCGGATGGAGGAGTTTCACTAGCCAGAGAAGAACACAAAGAGGTCGC
TGAAGTTGCTCAAGAGTTGCAAAAATATTGTGTTGAAGCACCAGTAAAAT
GCCCTTTAATCTTTGGAGAATGGGATGTCGTGTACTGTTCAGTGCCAACT
TCACCTGGGGGGTGGCTACAGAAGTGCATTTGGCCGGCTTGTCTGCGAAG
GAAGGAAATGATTCGGGCTGGTGAAGGTCCTGACCTGGGTGGAACAAGGG
TTCCTTCGCCGCTCTGGGTTTTCTTGGAGGGAGAGGGCTCTGGGGAAGGA
AGGGTTGAGGTCTGGATGAGAAGGGGATGGAGGNTGGAGGTGGACCACTC
GAATTGAGAAGGGGAGGGATGGAGTGCAATCTGGTGGCACGAGTGAGGTA
CGGGCCAATTAGGTGAGGTGAGGAGGGGGGGGGGAGGGGGGGGGAGGGGA
GGGGGGGTGTGGCGGAACATCGGACGACGAGCGGGCGGATAGGGGCAGGC
GGTGAGTGTTGCGGCGGGCAGCCAAGGGGCAGGGGGTCCGTCAATGACAG
TGGTGCGCCGGGGGCCGGGACGGGGGGGGGAGAAAGACGGATCCGCAAGA
AGACGTGAGTCGGGGGGGGCCGGTGGGCCGGTGGGGCACGGGTGAGGGGA
GAAGGGGGTCGCGGAGGAAAGGAGGAGGCGGCGGGCTGGCGAGCGGCCGC
AGGGGGAGGGGGGGGGCGTGGACTGCGCGGGC
back to top