EY683395

Overview
NameEY683395
Unique NameEY683395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683395 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.739e-46
Identity = 100/190 (52.63%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  297 LQMMSGNAFTIPSSLGGFVHQEXXXXXXXXXXXXXXXXX----------------RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVFQKKVYICPKKTCVHHEPSRGSRVI*GGKRSLLAENMGKKNGKCEKMFXKNMPFHSDWKAPPQDWGPPKNYK 818
            +QM+ G+ F+I SS+GGFVHQE                                 RN PGTPDPDA+VIALSP TLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ ++V +KKVYICP KTCVHH+ SR    + G K+   +   G+K  KCEK   K     SDWKA  +  G  + YK
Sbjct:    1 MQMIPGDPFSISSSMGGFVHQETHLHHLQQQIPDLNPNSNPNPNAKPNSSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKH-YSRKHGEKKWKCEKC-SKKYAVQSDWKAHAKTCG-TREYK 187          
BLAST of EY683395 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.208e-41
Identity = 83/129 (64.34%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  414 RNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVFQKKVYICPKKTCVHHEPSRGSRVI*GGKRSLLAENMGKKNGKCEKMFXKNMPFHSDWKAPPQDWG 800
            RNLPG PDP+AEVIALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL+QRT+K+V +K+VY+CP+K+CVHH P+R    + G K+    ++ G+K  KCEK   K     SDWKA  +  G
Sbjct:   44 RNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKH-GEKKWKCEKC-AKRYAVQSDWKAHSKTCG 169          
BLAST of EY683395 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.278e-40
Identity = 88/164 (53.66%), Postives = 105/164 (64.02%), Query Frame = 3
Query:  309 SGNAFTIPSSLGGFVHQEXXXXXXXXXXXXXXXXXRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDVFQKKVYICPKKTCVHHEPSRGSRVI*GGKRSLLAENMGKKNGKCEKMFXKNMPFHSDWKAPPQDWG 800
            SG+ F  P S     H E                 RNLPG PDP+AEVIALSP TLMATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKL+QRT+K+V +K+VY+CP+KTCVHH  SR    + G K+    ++ G+K   CEK   K     SDWKA  +  G
Sbjct:   11 SGSGFAQPQSSSTLDHDESLINPPLVKKK------RNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKH-GEKKWTCEKC-AKRYAVQSDWKAHSKTCG 165          
The following BLAST results are available for this feature:
BLAST of EY683395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JKD_ARATH4.739e-4652.63Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
MGP_ARATH1.208e-4164.34Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH2.278e-4053.66Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-049-G04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683395 ID=EY683395; Name=EY683395; organism=Citrus sinensis; type=EST; length=822bp
CGGACGCGTGGGCTTGAGATAGCAGCAATCATAAGTTGTTGGAGTTTTCT
TTTGAAATTGATCAAAACAAAACCAGATCTCTGTAACAAGAGTCCGAAAT
ATATTTTTGTTTTTAGATTAAAATTTTGAGTTTTTTTTTTCCTCCTTTCC
TTCTCTTTTCTTGTCTTTTGGCTTGAATCTCAGAGTCATCAGAATTTGAA
TATATATATATATATATACCAAACATTTATCAGCTTCTGTTTGGAGGAAA
AAAAAAAGCACAAAACAAAACCCTTAGTTTTTTGCACTTTGATAGCTTGC
AAATGATGTCTGGTAATGCTTTTACAATACCCTCTTCCTTAGGAGGGTTT
GTTCATCAAGAACAAAATCCCAACCCTAACCCTAAACCTAATCAGGCTGC
CAGTAAAAAGAAGAGGAATTTACCGGGAACTCCAGATCCAGATGCTGAGG
TTATTGCTCTATCCCCAAAGACACTCATGGCAACCAACAGATTCATATGT
GAAATATGCAATAAGGGTTTCCAAAGAGACCAAAACTTACAGCTTCATCG
AAGAGGACATAATCTTCCATGGAAGCTGAGGCAAAGAACCAACAAAGACG
TCTTCCAGAAGAAAGTTTATATCTGCCCAAAAAAGACTTGTGTTCATCAC
GAACCATCGAGGGGCTCTCGGGTGATTTGAGGGGGTAAAAGAAGCCTTTT
AGCAGAAAACATGGGAAAAAAGAATGGGAAGTGTGAAAAAATGTTCCNAA
AAAATATGCCTTTTCATTCGGATTGGAAAGCCCCCCCCCAAGACTGGGGG
CCCCCGAAAAATTATAAGGGGG
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