EY709580

Overview
NameEY709580
Unique NameEY709580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY709580 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = 3 
Query:   90 TDIKEVPLSIELLFGLAQLTLNGCKNLECLPRT-ISALKYLSTLNLSSPLKFRELPGKTSSRDQLLELHLEGTAIRGLPASIELLSGNVL-LNLKDCKNLKSRPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLEV 500
            ++++EV  S+     +  L LN CK+L+  P   + +L+YL   +  S  K  E+ G+       +++H++G+ IR LP+SI     +V  L L + KNL + PS+I  L+SL +L +SGCSKL+++PE +G +++L V
Sbjct:  653 SNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGLRSCDSLEKLPEIYGRMKPE---IQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRV 788
The following BLAST results are available for this feature:
BLAST of EY709580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMVRN_NICGU1.351e-1235.25TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-003-H02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY709580 ID=EY709580; Name=EY709580; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGCTCTTAAGACACATGTTCTTTCTGGTTGCTGGAAATTGA
AGGAATTTCTTGACATTGTGGGAAGTTCTTTCGGATGGAACTGATATTAA
AGAAGTGCCATTATCAATTGAACTTCTATTTGGACTTGCTCAGTTGACTC
TGAATGGCTGCAAAAATCTTGAGTGTCTTCCAAGGACCATAAGTGCTCTA
AAATATCTATCAACTTTGAATCTCTCTAGCCCTTTGAAATTCAGAGAGCT
CCCAGGGAAAACTTCAAGCAGGGATCAGCTCTTGGAGCTTCATTTGGAAG
GAACTGCTATAAGAGGATTGCCAGCATCTATTGAACTTCTTTCTGGCAAT
GTCTTGTTGAATTTGAAAGATTGCAAAAATCTCAAGAGTCGTCCAAGTAC
CATAAATGGTTTGAGATCTCTTAGAACGTTGTATCTCTCTGGCTGCTCCA
AACTTAAAAATGTGCCAGAGACCTTGGGAAAAGTTGAAAGCTTGGAAGTT
AGATTGTCTTGTTAGAATCGGGCCAAAATGCAGAATGATTTCGACTATGG
AACAGAGTGCAGTGGAGACAGTAACAAAGTTAGCAAAGCAGAATCGCTAA
GGTACTTTACAAAATTAATATTTGCCTTTAGACATTCAGTACCGTATTAC
TTCTATGTGCATTCCTAATCATATCTTCGACCGAAAGATTCAGATTCATG
GGAGAAGAATGTTGATAAAATTCAGCTATCTACAACAGCAATATCAGCTT
GCTCACTCGCCTTGCATAGGTTGAATCAACCTTCAGAGCCCTGCCGAAAA
ATTGAATCCAATACAACCAATTCCCATCTTAAGGGGCCTTTTCTTCCGCT
TTAACCCGCATCCTTTTTTATCCCAACCTGAGGGATTGGAAGAAAACC
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