EY682425

Overview
NameEY682425
Unique NameEY682425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_ARATH (Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.409e-43
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 310
            LS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AGEEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct:  239 LSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_NEMVE (Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.738e-17
Identity = 40/98 (40.82%), Postives = 67/98 (68.37%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 307
            L  +  K+  Y RS+ RQQ Q++++LQ+R+ EN++R   GE+PLP+ED S  +FKP+P P RL++ L++ ++  YC  ++  + QSF + +L +AL D
Sbjct:  233 LCQDSNKYHNYQRSVIRQQQQKENYLQRRQQENQSRIQRGEDPLPDEDLSK-MFKPLPVPSRLDNLLLSEQVNTYCQHVHQFSTQSFGKFFLAQALQD 329          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EI3HA_DANRE (Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio GN=eif3ha PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 310
            +S +  K+  Y R+L++QQ Q+Q + Q+R+ EN  R++ GE PLPEED S  +FK    PPR+++ LIA +I NYC  I   T Q+  +L++ +AL  N
Sbjct:  236 MSQDIVKYNTYCRNLSKQQQQKQQYQQRRQQENAQRQSRGEPPLPEEDISK-MFKAPQAPPRMDTLLIAGQINNYCQNIKEFTSQNLGKLFMAEALQSN 333          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_TAEGU (Eukaryotic translation initiation factor 3 subunit H OS=Taeniopygia guttata GN=EIF3H PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 307
            +S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED  N +FKP   PPR+ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:  249 MSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRGEPPLPEED-INKLFKPPQPPPRMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_SALSA (Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 301
            +S +  K+  Y R+L++QQ Q+  + Q+R+ EN  R+  GE PLPEED S  +FKP   PPR+++ LIA +I NYC  +   T Q+  +L++ +AL
Sbjct:  245 MSQDIVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRGETPLPEEDVSK-MFKPPQPPPRMDTLLIAGQINNYCQNVKEFTSQNLGKLFMAEAL 339          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_BOMMO (Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 307
            L+ E  KF  Y + + RQQ  +  W+ KR  EN AR A  E PLPEED  N +FKP P PPRL   ++A +I  Y   I+    QS ++LYLT+AL +
Sbjct:  233 LNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDV-NKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQN 329          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EI3HB_DANRE (Eukaryotic translation initiation factor 3 subunit H-B OS=Danio rerio GN=eif3hb PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.539e-16
Identity = 40/96 (41.67%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 301
            +S +  K+  Y RSL++QQ Q+  ++Q+R+ EN  R++ GE PLPEED +  +FKP   PPR+++ LIA++I  YC  I   T Q+  +L++ +AL
Sbjct:  234 MSQDIVKYNNYSRSLSKQQQQKHQYVQRRQQENAQRQSRGEPPLPEEDLTK-MFKPPQPPPRMDTLLIASQINTYCQTIKEFTSQNLGKLFMAEAL 328          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_CHICK (Eukaryotic translation initiation factor 3 subunit H OS=Gallus gallus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 307
            +S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED  N +FKP   P R+ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:  249 MSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENLQRQSRGEAPLPEED-INKLFKPPQPPARMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_HUMAN (Eukaryotic translation initiation factor 3 subunit H OS=Homo sapiens GN=EIF3H PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.075e-15
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 307
            +S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP   P R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:  253 MSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349          
BLAST of EY682425 vs. ExPASy Swiss-Prot
Match: EIF3H_BOVIN (Eukaryotic translation initiation factor 3 subunit H OS=Bos taurus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.075e-15
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   14 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 307
            +S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP   P R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:  253 MSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349          
The following BLAST results are available for this feature:
BLAST of EY682425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
EIF3H_ARATH2.409e-4381.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEMVE1.738e-1740.82Eukaryotic translation initiation factor 3 subunit... [more]
EI3HA_DANRE1.472e-1642.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_TAEGU3.278e-1641.84Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SALSA3.278e-1641.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOMMO5.592e-1644.90Eukaryotic translation initiation factor 3 subunit... [more]
EI3HB_DANRE9.539e-1641.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHICK2.125e-1540.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_HUMAN8.075e-1539.80Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOVIN8.075e-1539.80Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-032-G01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY682425 ID=EY682425; Name=EY682425; organism=Citrus sinensis; type=EST; length=561bp
CGGACGCGTGGGTTTGTCAGTGGAACAACAAAAGTTCCAATTTTACTATC
GAAGCCTAACACGTCAGCAAGCTCAGCAGCAATCATGGCTTCAGAAGAGA
AGGGATGAGAATAAGGCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCTGA
GGAGGATCCTTCAAATCCCATCTTTAAGCCAATTCCTGAGCCTCCTCGAT
TGGAAAGTTTTCTAATTGCAAATCGGATTGCCAACTATTGCAACCAAATT
AATGGGGTTACGGGACAGAGCTTTAGTCGATTATATTTGACGAAAGCTTT
GCATGATAATTGATGTGAAGCTCGATGGCAACTCTCTTATACCTATTTTG
CAGTAGCTGTTTGAAGATGAGATTGTGATTGCAAATGAGGTAAAGGTTGG
TTGTGTAATGTGATTGAAAGCGAAGATTTTGGACTGCAGCTTGTTTTTTT
ATTTTGTTGTAGAAATTTAGAGCAGACTGATATCTAGAAGGGAAATTCAG
AAATATCATGAAAATTATTATTAAATACTCGTAATTTTATTCGATTAAAA
AAAAAAAAAAA
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