EY682413

Overview
NameEY682413
Unique NameEY682413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.585e-48
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  190 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQ 588
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT KDRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN +N M+G  IAPAFMDKLVVHI +
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITK 147          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.053e-46
Identity = 105/176 (59.66%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  190 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYGGGEGERKIIPRVNLVIAQKGHQP 711
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNL+N M+G  IAPAFMDKLVVHI +        +      ++ GG+G+ K   +  LV A+ G  P
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIW-GGKGQGKSF-QCELVFAKMGINP 186          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.053e-46
Identity = 105/176 (59.66%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  190 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYGGGEGERKIIPRVNLVIAQKGHQP 711
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNL+N M+G  IAPAFMDKLVVHI +        +      ++ GG+G+ K   +  LV A+ G  P
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIW-GGKGQGKSF-QCELVFAKMGINP 186          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.779e-45
Identity = 103/179 (57.54%), Postives = 124/179 (69.27%), Query Frame = 1
Query:  193 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN +N  +G  IAPAF+DKLVVHI +      T        + G  GG+G+ K   +  LV A+ G  P
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNF---MTLPNIKVPLILGVWGGKGQGKSF-QCELVFAKMGINP 190          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 9.858e-45
Identity = 104/179 (58.10%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  193 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT KDRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   L+N  +G  IAPAF+DKLVVHI +      T        + G  GG+G+ K   +  LV A+ G  P
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNF---MTLPNIKVPLILGIWGGKGQGKSF-QCELVFAKMGINP 188          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.142e-43
Identity = 104/191 (54.45%), Postives = 127/191 (66.49%), Query Frame = 1
Query:  175 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNL+N M+G  IAPAFMDKLVVHI +      T        + G  GG+G+ K   +  LV+A+ G  P
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNF---LTLPNIKVPLILGIWGGKGQGKSF-QCELVMAKMGINP 186          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.506e-42
Identity = 89/137 (64.96%), Postives = 104/137 (75.91%), Query Frame = 1
Query:  190 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQ 588
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNL+N ++G  IAPAFMDKLVVHI +
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITK 151          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.968e-41
Identity = 87/141 (61.70%), Postives = 104/141 (73.76%), Query Frame = 1
Query:  178 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQ 588
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN++NT++G  IAP+FMDKLVVHI +
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITK 151          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.924e-40
Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  169 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT+KD+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ +N ++G  IAPAFMDKL VHI   +    T        + G  GG+G+ K   +  LV A+ G  P
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHI---VKNFLTLPNIKVPLILGVWGGKGQGKSF-QCELVFAKMGINP 183          
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.247e-39
Identity = 95/182 (52.20%), Postives = 122/182 (67.03%), Query Frame = 1
Query:  178 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY L+N ++G  IAPAFMDKLVVHI +      T        + G  GG+G+ K   +  LV  + G  P
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF---LTLPNIKVPLILGVWGGKGQGKSF-QCELVFRKMGINP 185          
The following BLAST results are available for this feature:
BLAST of EY682413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_MALDO5.585e-4869.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.053e-4659.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.053e-4659.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU5.779e-4557.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU9.858e-4558.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH4.142e-4354.45Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.506e-4264.96Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.968e-4161.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.924e-4051.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.247e-3952.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-032-F01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY682413 ID=EY682413; Name=EY682413; organism=Citrus sinensis; type=EST; length=874bp
GACTACACCAGAAACTGAGAATAAACGCAGGCAAGGGACCGGGGGTAGGG
TCCGGATTCCGGGGTGACCCACGCGTCCGCACGCACCCAGCGCACCCCTT
AAAATTCCTTTGCCTGCATTGCAGCGTGACCCTTTACCTACTTCAATCAC
AGCCGTCCAATTCTCGCTAGCCTAATGGCTGCTGCTGTACCGTTGAGCTT
CAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGCTCATCTTTCTTTGGCA
CCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCCATCCAAGGTCCCTTCT
GCGAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGACCAAGAA
GGACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAGCAAGACA
TCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGA
ACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGG
TCTCCGCACATACAACTTGAACAACACGATGGAAGGTCTCTAAATTGCCC
CTGCTTTCATGGACAAGCTTGTTGTTCACATCAACCAAAAAATTCATGGC
CCGGCCACACATCAAGGGTCCTCCTCCTCTTGGGTATATGGGGGAGGCGA
AGGGGAAAGGAAAATCATTCCAAGGGTGAACTTGGTTATCGCCCAAAAAG
GGCATCAACCCCAAATTATAGATGAATTGCCGGAAAAATTTAAAGAGAGA
CAAAGGCGGAAAAACCACAAAAAGATTGATAAAGAAAAAGGTAACCAGGA
AGGGGACCCTGAAAACTAGTAAGACGGCGGAAAAAAAGGGGGACCCCACA
CGAAAGGCGGCGGGATGTAAGATG
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