EY682413
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 5.585e-48 Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 1 Query: 190 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQ 588 P + NGS ++ SVPSS+F G+SLKKV+SR SKV S S +I A VDE+KQT KDRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN +N M+G IAPAFMDKLVVHI + Sbjct: 15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITK 147
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 1.053e-46 Identity = 105/176 (59.66%), Postives = 128/176 (72.73%), Query Frame = 1 Query: 190 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYGGGEGERKIIPRVNLVIAQKGHQP 711 PLS NGSGA S VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNL+N M+G IAPAFMDKLVVHI + + ++ GG+G+ K + LV A+ G P Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIW-GGKGQGKSF-QCELVFAKMGINP 186
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 1.053e-46 Identity = 105/176 (59.66%), Postives = 128/176 (72.73%), Query Frame = 1 Query: 190 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYGGGEGERKIIPRVNLVIAQKGHQP 711 PLS NGSGA S VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNL+N M+G IAPAFMDKLVVHI + + ++ GG+G+ K + LV A+ G P Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIW-GGKGQGKSF-QCELVFAKMGINP 186
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 5.779e-45 Identity = 103/179 (57.54%), Postives = 124/179 (69.27%), Query Frame = 1 Query: 193 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711 L+ NGSG S PSS+FFGTSLKKV SSR+P SK+ S SFKI A E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM GTHYAV+SS+ Y+S GLR YN +N +G IAPAF+DKLVVHI + T + G GG+G+ K + LV A+ G P Sbjct: 16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNF---MTLPNIKVPLILGVWGGKGQGKSF-QCELVFAKMGINP 190
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 9.858e-45 Identity = 104/179 (58.10%), Postives = 125/179 (69.83%), Query Frame = 1 Query: 193 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711 L+ NGSGA S P+S+FFGTSLKK V+SR+P SKV + SFKI A E++E++QT KDRWKGLAYD SDDQQDITRGKG VD LFQAPM GTHYAVMSSY+Y+S GLR L+N +G IAPAF+DKLVVHI + T + G GG+G+ K + LV A+ G P Sbjct: 16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNF---MTLPNIKVPLILGIWGGKGQGKSF-QCELVFAKMGINP 188
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 4.142e-43 Identity = 104/191 (54.45%), Postives = 127/191 (66.49%), Query Frame = 1 Query: 175 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711 MAAAV PLS NGSG+ A S P+S+F G + VS +K + SFK+ A V E+KQT DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNL+N M+G IAPAFMDKLVVHI + T + G GG+G+ K + LV+A+ G P Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNF---LTLPNIKVPLILGIWGGKGQGKSF-QCELVMAKMGINP 186
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 3.506e-42 Identity = 89/137 (64.96%), Postives = 104/137 (75.91%), Query Frame = 1 Query: 190 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQ 588 PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE VD KQT DRWKGL D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNL+N ++G IAPAFMDKLVVHI + Sbjct: 15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITK 151
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.968e-41 Identity = 87/141 (61.70%), Postives = 104/141 (73.76%), Query Frame = 1 Query: 178 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQ 588 A PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE D KQT DRWKGL D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN++NT++G IAP+FMDKLVVHI + Sbjct: 11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITK 151
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.924e-40 Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 1 Query: 169 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711 S + A + N S VP+S+F G+ LK VSSR SK+ + +FKI AE DE KQT+KD+W+GLA+D SDDQQDITRGKG D LFQAPMGTGTH AV+SSY+YIS GLR Y+ +N ++G IAPAFMDKL VHI + T + G GG+G+ K + LV A+ G P Sbjct: 6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHI---VKNFLTLPNIKVPLILGVWGGKGQGKSF-QCELVFAKMGINP 183
BLAST of EY682413 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.247e-39 Identity = 95/182 (52.20%), Postives = 122/182 (67.03%), Query Frame = 1 Query: 178 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLNNTMEGL*IAPAFMDKLVVHINQKIHGPATHQGSSSSWVYG--GGEGERKIIPRVNLVIAQKGHQP 711 A+ PLS N S A TSVPS++FFG SLKKV ++ + KV + + ++ A EVDE TK+DRWKGL + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY L+N ++G IAPAFMDKLVVHI + T + G GG+G+ K + LV + G P Sbjct: 11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF---LTLPNIKVPLILGVWGGKGQGKSF-QCELVFRKMGINP 185 The following BLAST results are available for this feature:
BLAST of EY682413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >EY682413 ID=EY682413; Name=EY682413; organism=Citrus sinensis; type=EST; length=874bpback to top |