EY682058

Overview
NameEY682058
Unique NameEY682058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY682058 vs. ExPASy Swiss-Prot
Match: TIC_ARATH (Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 52/132 (39.39%), Postives = 62/132 (46.97%), Query Frame = 3 
Query:   18 YLQPQGQHXXXXXXXXXXXXXFFIQRHRDXXXXXXPXXXXXXXXXXXXXCTPVTHSNSGTSDPAKAVAAVS---NMKGGGLPSQGLVHAGQFATTQSSGKQHQLVPPGFPYVHAVPTAVQVKPAEQKQPAGE 404
            Y+Q Q QH             ++IQRH+                       PVT + + TSDPAKA+AA S   NMKGGG                   +QHQL PPGF  VHAV +AVQVKP +QKQ AGE
Sbjct: 1448 YMQAQHQHQQQQITISPSGG-YYIQRHQQQSGSAP--------------AVPVTGAVTATSDPAKAIAAASAANNMKGGG--------------GMGKTQQHQLGPPGFTNVHAVSSAVQVKPVDQKQQAGE 1550
The following BLAST results are available for this feature:
BLAST of EY682058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIC_ARATH1.351e-1239.39Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-028-G04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY682058 ID=EY682058; Name=EY682058; organism=Citrus sinensis; type=EST; length=898bp
CCACGCGTCCGGCTGCTTACTTGCAACCTCAAGGTCAACATGGCACGAGT
ACATCTTCATCAGCCTCAGCTGGAGGTGGGTTTTTCATCCAAAGGCATCG
TGATCAACAGCTGCAGCAGCAGCCTGGCTCCTCGGCAACTTCCTCTTCTG
GGATGCTGTCATTATGTACGCCAGTTACTCATTCTAATTCGGGCACTTCT
GATCCGGCCAAGGCTGTAGCTGCAGTTAGCAATATGAAAGGTGGTGGCTT
GCCTTCACAGGGTCTTGTCCATGCTGGTCAATTTGCTACTACACAGTCTT
CTGGGAAGCAACATCAGCTTGTTCCTCCTGGCTTCCCATATGTTCATGCA
GTTCCCACTGCGGTCCAGGTGAAACCAGCGGAGCAGAAACAACCCGCTGG
TGAGTAAGGATTGTGCCCTGGTGCCTTAAGCTGCAACACTCATATAGGGA
ACAAAAAAATACATAGTGCCTAGTGAGATGAATTAGATTGCGGATGTATA
AATTTTGAAGGGAGAATAGATTTTATTGCCCAAGTAAATTACAGAATCTG
CATACTCTCTGGCCGCATGGAAAAGGATAAAATGAGGATCCATTGATGAA
AGCACAATCCGAAAACTCACCATTTGGGTTGCGGAACCCCCAATTTTTGG
AAAGGAAGTTTGAAACAGGGGGGGAAAATGATTCTTTGTGAAATGTTCCT
TGAAATGGGAATTCAGCTTTGGAACACTGTGTTTTATAATCGAAAAAAGT
TGAATCTTGAAATCAAATTAAAAATTTTTATTGGTTTCCGGGGGGGGAAA
AAGAAAAACCAAAGAAAAAAAAAAGGGGGCCCCCAAAAAAATTTTTTTTT
GGTTAAGGGCAAAAGAAGGGAAAAAAGGGGGAACAAAAAAAAAAAAAA
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