EY744886

Overview
NameEY744886
Unique NameEY744886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1001
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY744886 vs. ExPASy Swiss-Prot
Match: SR140_PONAB (U2-associated protein SR140 OS=Pongo abelii GN=SR140 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.069e-12
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2 
Query:   14 LMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 259
            L LVSDVL+NSSA V NAS YR  FE  L  I    N  YR+I G + +E  K+RV+   + W DW ++ + ++  L+  FL
Sbjct:  594 LYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 675
[Close]
BLAST of EY744886 vs. ExPASy Swiss-Prot
Match: SR140_MOUSE (U2-associated protein SR140 OS=Mus musculus GN=Sr140 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.069e-12
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2 
Query:   14 LMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 259
            L LVSDVL+NSSA V NAS YR  FE  L  I    N  YR+I G + +E  K+RV+   + W DW ++ + ++  L+  FL
Sbjct:  595 LYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
[Close]
BLAST of EY744886 vs. ExPASy Swiss-Prot
Match: SR140_HUMAN (U2-associated protein SR140 OS=Homo sapiens GN=SR140 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.069e-12
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2 
Query:   14 LMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 259
            L LVSDVL+NSSA V NAS YR  FE  L  I    N  YR+I G + +E  K+RV+   + W DW ++ + ++  L+  FL
Sbjct:  595 LYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
The following BLAST results are available for this feature:
BLAST of EY744886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SR140_PONAB6.069e-1243.90U2-associated protein SR140 OS=Pongo abelii GN=SR1... [more]
SR140_MOUSE6.069e-1243.90U2-associated protein SR140 OS=Mus musculus GN=Sr1... [more]
SR140_HUMAN6.069e-1243.90U2-associated protein SR140 OS=Homo sapiens GN=SR1... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-005-F04-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744886 ID=EY744886; Name=EY744886; organism=Citrus sinensis; type=EST; length=1001bp
CCACNCGTCCGGGCTCATGCTTGTTTCTGATGTTCTCCATAATAGCAGTG
CTCCTGTAAAAAATGCATCTGCATACCGTACAAAATTTGAAGCGACATTA
CCTGACATAATGGAAAGCTTCAATGACTTGTATCGCAGTATAACTGGAAG
GATCACTGCCGAGGCCCTAAAGGAGCGAGTTTTGAAAGTGTTGCAAGTTT
GGTCAGACTGGTTTCTGTTTTCAGATGCATATGTGAATGGATTACGGGCT
ACTTTCCTTCGATCTGGAAACTCTGGGGTGACACCTTTTCATTCTATATG
TGGAGATGCACCAGAGATAGACAAGAAGAATAACTCTGAAGATACTTGTG
ATTTGAGCAAGACGAACCAAGATACTGCACTGGCAATGGGTAAAGGGGCT
GCTATTAAGGAGCTAATGAACCTTCCCCTTTCTGAGCTTGAGAGACGTTG
TAGACATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCAC
GATTGCTAAGCCTGGAAGATGCAGAAAAGCAGAGGGGCTACAAACTAAAT
GATGACTTGAAATCGGCTCATAGCCCATCTAATTCTGGAAGATATCCACG
TGGCTGGAAAGAAACAAAATATGGAAGCAAAATCCATGGGGATTGTCCGG
GGGGGAATGGTTATGAAGAAGATGAAAAGCTGTCCCAACCCCGGGGGGGT
CTGTGCCTTTGGGAACCATTGTTAACCCCCCCCACCCCCTGAAATAAAAA
CCCTTTCCCAAAAAAAAAAAAAAAATGGATCCTCGTTTTTCCCCCCCCCC
CAAAATGGCTTCCGGAGAGAAAAAATGAAAGAGGATATATAGAAAAAAAA
AAAAAAGTCCCCAGGGGGCCCGGGATATTGAACATACCCTCTTCTTCCGG
AAAGGAAAAAAAACTCCTGCGCCACCGCCACCCTCCCAAGCGCCAAACAA
TATTTTTGACCTCTTACCAATTTTTGGGCATCTACGCCACTGTTTTCCCA
A
back to top