EY680407

Overview
NameEY680407
Unique NameEY680407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.921e-18
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNP 692
            I FTQEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  F PAG +           G + N+TV  DGTA F I  K + L+GP S+IGR +V+H++P
Sbjct:   18 IYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADP 122          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.921e-18
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP 692
            + FTQEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  F PAG +           G + NITV  DGTATF I   ++ L+GP+S++GR +V+H++P
Sbjct:   18 VQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADP 122          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.924e-17
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP 692
            I FTQEGNGTTTV G +SG+ PG H   +H  G+  N  ++TG  F P G             G + NITV  DGTATF I   ++ L GP+S++GR +V+H+ P
Sbjct:   18 IFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEP 122          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNPQSNPGPGSNLGWS 731
            I F+QEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  F PAG +           G + NITV  DGTA+F I  K + L+G +SVIGR +V+H +P      G  L  S
Sbjct:   18 IFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKS 135          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.168e-16
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP 692
            + F QEG+G TTV GN+SG+ PG H   +H  G+  N  ++TG  + P G +           G + NITV  DGTATF I   ++ LSGP+S++GR +V+H+ P
Sbjct:   18 VYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEP 122          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.168e-16
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNPQSNPGPGSNLGWS 731
            + FTQEG+G TTV G ISG++PG H   +H  G+  N  ++TG  F P G +           G + N+TV  DGT  F I   ++ LSGP S++GR +V+H++P      G  L  S
Sbjct:   20 VQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKS 137          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.168e-16
Identity = 49/118 (41.53%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNPQSNPGPGSNLGWS 731
            I FTQ+G   TTV GNISG+ PG H   +H  G+  N  ++TG  + PAG +           G + NITV  DGTA+F I  K + L+GP S+IGR +V+H++P      G  L  S
Sbjct:   18 ILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKS 135          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.444e-16
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIYG-KVALSGPDSVIGRGLVLHSNP 692
            I FTQEG+G TTV G +SG+ PG H   +H  G+  N  ++TG  F P G             G + NITV  DGTATF I   ++ L+GP+S++GR +V+H++P
Sbjct:   18 IFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADP 122          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNP 692
            I FTQ+G+  TTV GN+SG+ PG H   +H  G+  N  ++TG  + PAG +           G + NITV  DGTA+F +  K + L+GP S+IGR +V+H++P
Sbjct:   18 IFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADP 122          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYG-KVALSGPDSVIGRGLVLHSNP 692
            I F+Q+G+  TTV GN+SG+ PG H   +H  G+  N  ++TG  + PAG +           G + NITV  DGTA+F I   ++ L+GP S+IGRG+V+H++P
Sbjct:   18 ILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADP 122          
The following BLAST results are available for this feature:
BLAST of EY680407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SODC_PAUKA9.921e-1844.76Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC1_MESCR9.921e-1843.81Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC1_BRAJU4.924e-1744.76Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_IPOBA2.444e-1642.37Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_SPIOL4.168e-1641.90Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PINSY4.168e-1638.98Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC2_SOLLC4.168e-1641.53Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_ARATH5.444e-1642.86Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_NICPL7.110e-1641.90Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_CAPAN7.110e-1641.90Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-G04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680407 ID=EY680407; Name=EY680407; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGAAAATTTTTTCTTTTTTATTTTAAAAATTATGTCTGCAC
CATCCTAATTTTATCATATGTACATTTAATCATAAAAAAATTTTGATATA
TTTTCTACAAACATTATATTAGTCATTAGACAACTAATTTACCACTAACA
CTATTAGAATTTGTAAGAGAATCTAAGTAAAAAAGACTATTTAACCCTTT
AATGCATTAAAAGACTATTTTATCCTTTGAAACTTTGAATATATATATAT
ATATATTCCTTCTGATGGTGTTGTTTCTATGTTTTTTGGGAGTTTACGAT
TTTTATACTCTTGACCATTCACTTAAATGTAATATTTTATATTGCTCAGA
TCACGTAGCACAATGGTGAATGCAACTGTAGTTCTTACTGGAGTTGTGGG
TCGTGTTGGAACTATTTCCTTTACCCAGGAAGGAAATGGTACAACAACCG
TGGAAGGAAACATCTCTGGTGTCACTCCTGGTGATCATGCACTGGTTATT
CACACTTACGGAAACGTAAATAATGTTTGGATAACAACTGGAGCCCCTTT
TAAACCTGCTGGAACTAAAGGTGTTATAGACAACATCACTGTTGATGTTG
ACGGTACTGCTACTTTTAAAATTTACGGGAAGGTTGCTCTTTCTGGACCA
GATTCTGTTATTGGAAGGGGTCTTGTACTCCACTCAAATCCCCAGTCAAA
TCCCGGGCCCGGGAGTAACTTGGGGTGGTCATGGGTCTCCATGGATGGAA
ATGGGCTCCCCTCCCAAACATAAAAAAAAACTTTGGAACTGAGGGTTCCT
GGGGGTTAAAATATTTTAAAAAAAAAAAAAAAAATGGTGGGCAGAAAAGC
TGGGGCTTA
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