EY680378

Overview
NameEY680378
Unique NameEY680378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680378 vs. ExPASy Swiss-Prot
Match: PTFBC_ECOLI (PTS system fructose-specific EIIBC component OS=Escherichia coli (strain K12) GN=fruA PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.430e-15
Identity = 42/78 (53.85%), Postives = 48/78 (61.54%), Query Frame = -1
Query:   28 YCVKFISRAIRLPQSXXXXXXXXXXXXXXXLFTGLAMIYLVGPPVAKMLTGLTDFLSTMGTTNAVLLGILLGGMMCVD 261
            Y  K IS  ++LPQS               L  GLAMIYL+G PVA +L GLT +L TMGT NAVLLG +LGGMMC D
Sbjct:  328 YIAKLISTQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAVLLGAILGGMMCTD 405          
BLAST of EY680378 vs. ExPASy Swiss-Prot
Match: PTF3E_RHOCA (PTS system fructose-specific EIIBBC component OS=Rhodobacter capsulatus GN=fruA PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = -1
Query:   28 YCVKFISRAIRLPQSXXXXXXXXXXXXXXXLFTGLAMIYLVGPPVAKMLTGLTDFLSTMGTTNAVLLGILLGGMMCVD 261
            Y  +++  AI+LP++                 TGL M+Y+VG PVA +L  +T FL  +GTTNAV+LG++LGGMM VD
Sbjct:  343 YVARWLRDAIKLPRTLEGLKPVLILPLLSTAITGLIMVYVVGTPVAAILAAMTAFLQGLGTTNAVVLGLILGGMMAVD 420          
BLAST of EY680378 vs. ExPASy Swiss-Prot
Match: PTFBC_HAEIN (PTS system fructose-specific EIIBC component OS=Haemophilus influenzae GN=fruA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = -1
Query:   28 YCVKFISRAIRLPQSXXXXXXXXXXXXXXXLFTGLAMIYLVGPPVAKMLTGLTDFLSTMGTTNAVLLGILLGGMMCVD 261
            Y VK ++  IRLP S               +  GL MIYL+ PPVA+++  L+++L++MG  NA++LG ++G MMC+D
Sbjct:  329 YVVKGLNVIIRLPASLTSLKPILILPLLGSMIVGLTMIYLINPPVAEIMKELSNWLTSMGEVNAIVLGAIIGAMMCID 406          
The following BLAST results are available for this feature:
BLAST of EY680378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PTFBC_ECOLI8.430e-1553.85PTS system fructose-specific EIIBC component OS=Es... [more]
PTF3E_RHOCA5.114e-1243.59PTS system fructose-specific EIIBBC component OS=R... [more]
PTFBC_HAEIN9.645e-1139.74PTS system fructose-specific EIIBC component OS=Ha... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-D11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680378 ID=EY680378; Name=EY680378; organism=Citrus sinensis; type=EST; length=315bp
GGGGCCGCAGTACGGTCGGGATTCCGGGTCGACGCACATCATGCCGCCCA
ACAAGATGCCAAGCAGCACGGCGTTGGTGGTGCCCATGGTGCTGAGGAAA
TCCGTGAGGCCGGTAAGCATCTTCGCCACCGGCGGCCCCACCAGGTAAAT
CATCGCCAGGCCCGTGAACAGGCTCGCCAGCAACGGGATGATCAGGATCG
GCTTGAGGGCTTCGAGGCTCTGGGGCAAACGGATCGCACGACTGATGAAT
TTGACGCAGTAGCCGGCCAGGAAACCGGCGAAGATCCCGCCGATAAACCC
CGCGCCCAAGGTGCT
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