EY680341

Overview
NameEY680341
Unique NameEY680341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680341 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.454e-77
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAGKSGRMCAGAIIGRVREWNRMINEGDLRNF 455
            YAIAFQER++IPDEKM YYE+LAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLS RVALVGDAAGYVTKCSGEGIYFA KSGRMCA AI+   +   +MI+EGDLR +
Sbjct:  229 YAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKY 379          

HSP 2 Score: 32.3426 bits (72), Expect = 8.454e-77
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 2
Query:  443 LEEFLEKWEKTYGQLKRVREVWEKGFY 523
            L ++LEKW+KTY    RV +V +K FY
Sbjct:  376 LRKYLEKWDKTYLPTYRVLDVLQKVFY 402          
BLAST of EY680341 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.123e-68
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAGKSGRMCAGAIIGRVREWNRMINEGDLRNF 455
            YAIAFQER+KI D+KM YYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQLATR RA  KI GGKIIRVEAHPIPEHPRPRRL  RVALVGDAAGYVTKCSGEGIYFA KSGRMCA AI+       RM++E DLR +
Sbjct:  226 YAIAFQERIKISDDKMKYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQLATRLRADSKITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEMGKRMVDESDLRKY 376          
BLAST of EY680341 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.502e-68
Identity = 123/151 (81.46%), Postives = 131/151 (86.75%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAGKSGRMCAGAIIGRVREWNRMINEGDLRNF 455
            YAIAFQERVKIPD+KM YYE  AEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQ ATR RAKD+I GGKIIRVEAHPIPEHPRP+R++GRV LVGDAAGYVTKCSGEGIYFA KSGRMCA AI+       RM+ E DLR +
Sbjct:  225 YAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRY 375          
BLAST of EY680341 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.273e-53
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTV-THKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAGKSGRMCAGAIIGRVREWNRMINEGDLRNF 455
            YAIAFQER+++P++KM YY+ LAEMYVGDDVSPDFY WVFPK DHVAVGTGT+  +K  IK  Q   R RA  K+ GG+II+VEAHPIPEHPRPRR+ GRVALVGDAAG VTK SGEGIYFA KS RMCA  I+       R+  E DL+ +
Sbjct:  175 YAIAFQERIRLPEDKMAYYDELAEMYVGDDVSPDFYAWVFPKYDHVAVGTGTMKVNKARIKDLQAGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRVPTEADLKQY 326          
BLAST of EY680341 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 49/129 (37.98%), Postives = 62/129 (48.06%), Query Frame = 3
Query:   12 AFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGR-VALVGDAAGYVTKCSGEGIYFAGKSGRMCAGA 395
            A+ E +K P     Y     ++Y    +SPDFYGWVFP     ++G G  T   D+      T  R    +   + IR E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   GR  A A
Sbjct:  167 AYHEIIKAPTTVANYDPTRCDVYYDGRISPDFYGWVFPHGKTASIGMG--TELPDVSLKDCTTLLRQMSGLDKEETIRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEA 293          
The following BLAST results are available for this feature:
BLAST of EY680341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_ARATH8.454e-7787.42Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC1.123e-6882.78Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ2.502e-6881.46Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY32.273e-5366.45Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA2.300e-1337.98Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-A08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680341 ID=EY680341; Name=EY680341; organism=Citrus sinensis; type=EST; length=531bp
ATTACGCCATTGCATTTCAGGAAAGAGTCAAAATCCCTGACGAGAAAATG
GTGTACTATGAGAACTTGGCGGAGATGTACGTTGGTGATGATGTGTCGCC
GGACTTTTATGGGTGGGTGTTCCCCAAGTGTGATCATGTGGCAGTTGGTA
CAGGCACAGTGACACACAAAGGTGATATCAAGAAGTTCCAACTTGCAACT
AGAAACCGGGCCAAGGACAAAATCCTTGGTGGCAAGATCATTCGAGTGGA
GGCACACCCGATTCCTGAACACCCCCGCCCGCGGAGGCTATCGGGGAGAG
TGGCATTAGTCGGAGATGCAGCCGGGTACGTCACGAAATGCTCTGGCGAG
GGCATTTACTTTGCGGGCAAGAGTGGAAGAATGTGTGCGGGAGCCATCAT
TGGAAGGGTCAGAGAATGGAACAGGATGATCAATGAAGGGGACTTGAGGA
ATTTTTGGAAAAATGGGAAAAAACTTACGGGCAACTTAAAAGGGTACGGG
AGGTTTGGGAAAAGGGGTTTTACCCAATCAA
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