EY680338

Overview
NameEY680338
Unique NameEY680338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY680338 vs. ExPASy Swiss-Prot
Match: PAP8_ARATH (Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.588e-50
Identity = 93/120 (77.50%), Postives = 108/120 (90.00%), Query Frame = 3 
Query:   12 DVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRR 371
            +VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL GKL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+RR
Sbjct:  119 EVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTGKLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRRR 238
The following BLAST results are available for this feature:
BLAST of EY680338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP8_ARATH1.588e-5077.50Probable plastid-lipid-associated protein 8, chlor... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-A05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680338 ID=EY680338; Name=EY680338; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGGATGTCGTGTACTGTTCAGTGCCAACTTCACCTGGGGGT
GGCTACAGAAGTGCATTTGGCCGTCTTTTCTTCAAAACAAAGGAAATGAT
TCAGGCTGTTGAAGCTCCTGACACTGTTAGAAACAAGGTTTCCTTCACCG
CTCTGGGTTTTCTTGACGGAGAGGTCTCTTTGAAAGGAAAGCTTAATGCT
CTGGATGAGAAATGGATTCAAGTTGTATTTGAACCACCTGAACTGAAAGT
TGGAGGATTGGAGTTCCGATATGGCGGTCAGAGTGAGGTTAAGTTGCAGA
TTACATACATAGATGAAAAGATCAGGCTGGGGTTAGGATCGAGAGGTTCA
CTATTTGTTTTCCAGAGACGCACACAAGCAGCATAGCTGGACAGAGTTAA
AGTTTGTGCTTGTGTTCTGTAAATCCTGAATGCTTCTTTGTAATGCCAAG
CTATGCCCGTGAATAGCAAATTTAGGCAGAAACTGATGCCTCAGCGCCAT
ACCGTATCTATCGTACACTGTAATCACAACTCAACTGTTGTATGATAGAA
ACATGCAATCCTGAATTAATGCTTATTCTCGTCGAGCAGCAGAAAAGCCA
TTAATCCNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAA
NAAAAAAANNNAAAAAAANAAAANAAAAAAAAAANAAAAAAANNNAAAAA
AAAAAAAAAAAAAANAAAAANNANNAAAAAAAAAAAAAAAAAAAANAGGG
GGGGGCCCCCCAAAAAAAACCACCTTAAATCCCCCGGGGTGGCGGACCCC
TCATCCCCTTTTTATATGGGCCACCCAATATTATTTTTAGGGGGGGGCGC
TTTTTTAAAAACCGCGGGGGGGGGGGAAAAAA
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