EY680308

Overview
NameEY680308
Unique NameEY680308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_FLATR (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.938e-36
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAA 285
            V FVELPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKLT+TPGL+N SPYE+GW+IKVKPS+PS+L+SLM P+ YTKFCEEE AA
Sbjct:   71 VVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSELDSLMGPKEYTKFCEEEGAA 163          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSJ (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.531e-36
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 282
            V FVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL++TPGL+NSSPYE+GW+IKVKPSSPS+L++L+DP  YTK CEEE+A
Sbjct:   72 VVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSI (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.531e-36
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 282
            V FVELPE GA V QGG FG VESVKATSD+NSPISGEV+EVN KL++TPGL+NSSPYE+GW+IKVKPSSPS+L++L+DP  YTK CEEE+A
Sbjct:   72 VVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.531e-36
Identity = 70/94 (74.47%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 288
            V FV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE+GW+IKVKPS+PS+L+SLM  + YTKFCEEE+AAH
Sbjct:   69 VVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.638e-36
Identity = 69/94 (73.40%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 288
            V FV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE+GW+IKVKPS+PS+L+SLM  + YTKFCEEE++AH
Sbjct:   69 VVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.773e-35
Identity = 70/94 (74.47%), Postives = 81/94 (86.17%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 288
            V FVELPE G SV +G GFG VESVKATSDVNSPISGEVIEVN+ LT  PGL+NSSPYE+GW+IK+KP+SP +LESL+  + YTKFCEEE+AAH
Sbjct:   72 VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH2_ARATH (Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.814e-34
Identity = 68/94 (72.34%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 288
            V FVELPE  +SV +   FG VESVKATS++ SPISGEVIEVN+KLT++PGL+NSSPYE+GW+IKVKPSSP++LE+LM P+ YTKFCEEE+AAH
Sbjct:   73 VVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.369e-34
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 288
            V FVELPE   SV +   FG VESVKATS++ SPISGE+IEVN KLT++PGL+NSSPYE+GW+IKVKPSSP++LESLM P+ YTKFCEEE+AAH
Sbjct:   72 VVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 282
            V F ELPE GA V  G  F  VESVKATSDVNSPISGE++EVN+KL+ +PGL+NSSPYEEGW++KVKPS+P++LESLM  + YTKFCEEE+A
Sbjct:   72 VVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDSPGLLNSSPYEEGWMVKVKPSNPAELESLMGSKEYTKFCEEEDA 162          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.710e-30
Identity = 61/84 (72.62%), Postives = 74/84 (88.10%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT 258
            V FV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKL++TPGL+NSSPYE+GW+IKVKPS+PS+L+SLM  + YT
Sbjct:   69 VVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYT 152          
The following BLAST results are available for this feature:
BLAST of EY680308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_FLATR1.938e-3676.34Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSJ2.531e-3676.09Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSI2.531e-3676.09Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAAN2.531e-3674.47Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPR5.638e-3673.40Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_PEA4.773e-3574.47Glycine cleavage system H protein, mitochondrial O... [more]
GCSH2_ARATH1.814e-3472.34Probable glycine cleavage system H protein 2, mito... [more]
GCSH1_ARATH2.369e-3472.34Glycine cleavage system H protein 1, mitochondrial... [more]
GCSH_MESCR7.132e-3170.65Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPU2.710e-3072.62Glycine cleavage system H protein, mitochondrial (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-F10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680308 ID=EY680308; Name=EY680308; organism=Citrus sinensis; type=EST; length=474bp
CCACGCGTCCGGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACA
AGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTA
ATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACTCCAAGCTCACCCAA
ACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGAAGGATGGCTGATAAA
GGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCCTTGATGGATCCACAGG
CTTACACGAAATTTTGCGAAGAAGAAAATGCAGCTCATTAGAATCTTCAC
ACTGTTTCATTTTCTTTTCCCAAAACATATTAATAAATCTCTTTGTTTTA
CTCGCTATTTGTGTTGTAATTATGCATCTTCATGTAATTAAGACCCATTT
CTCCTTTCTCTTTTACCCGTACTAACTATTTAATTTTGACTGTTTGAGGT
TCGTTCCAAAAAAAAAAAAAAAAA
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