EY680299

Overview
NameEY680299
Unique NameEY680299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY680299 vs. ExPASy Swiss-Prot
Match: PP438_ARATH (Pentatricopeptide repeat-containing protein At5g60960, mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 69/120 (57.50%), Postives = 84/120 (70.00%), Query Frame = 3 
Query:   12 FLTRLPLIERIEQAMSVFDKMKTDGHNPDTETYDLLMRKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPI--AVKKGKKRETLPEKMARKRRRLKQIRLSFVKKPKRTMMR 365
            FL  L  IER+E AMSVF  MK +G  P  +TYDLLM K CA+N++ +AN L+ EA + G+ V PKEYRVDPR++KK         KKRETLPEK ARK++RLKQI +SFVKKP   M R
Sbjct:  400 FLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAVSPKEYRVDPRFMKKKTKEVDSNVKKRETLPEKTARKKKRLKQINMSFVKKPHNKMRR 519
The following BLAST results are available for this feature:
BLAST of EY680299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP438_ARATH2.920e-3057.50Pentatricopeptide repeat-containing protein At5g60... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-F01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680299 ID=EY680299; Name=EY680299; organism=Citrus sinensis; type=EST; length=849bp
CCCGCGTCCGGTTCTTGACGAGACTCCCTTTGATTGAGAGGATCGAACAG
GCGATGAGTGTGTTTGACAAGATGAAGACAGATGGGCACAATCCTGATAC
CGAGACATATGATTTGTTGATGAGGAAATGGTGTGCTCATAATCGAGTTG
ATAAGGCTAATGCATTGTTCGATGAGGCAGTGAGAAATGGGGTGGAGGTT
AAGCCAAAGGAGTATAGGGTGGATCCAAGGTACTTGAAGAAACCGATTGC
TGTGAAAAAAGGGAAGAAGAGGGAGACATTACCTGAGAAAATGGCAAGAA
AGAGGAGACGCCTAAAGCAAATCCGATTAAGTTTTGTGAAGAAGCCAAAA
CGAACGATGATGCGATGAAACTTTTGGTGTTCACTTAATTTTCTTTTGCA
ATGTGGAATTACCAAGGGCCAAGGTCCTATTCGGAAATTTGCTAATTTGT
TTTTGACATAATAGTGTTGTTTTTAATGTTCTTGTTGTTATCCTTTCAGT
AATTGCAACATTAGAAAAATAAAATTTTGTTTACTCTTGATTTGACAAAT
AACCTTTCAGGGGTTTAAGGACAGACGAAAATGCAAACCAAGGAAAAAAC
AAAAGTAGGGGGGGGGAGGACTAAGGGTCCAAAGGCCTGTTATGCATTTT
GGCGAGGCCGTAATAGACGTGAGGCTAATCGAAAAAGCGATAAGCCACTA
AAGCACCCACTACCAAACCGTCGGCAATTTTTGTTTTCAGTGTAACAGAG
TAAACCAAGCAAGGAGGAGGAGTTAATAGTGTTACGGAGATTAAAGAGGG
GACGTGGCTTGAGGACCGGCCCGCACAATCTTGCGAAAAAAAGCGCGTA
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