EY680298

Overview
NameEY680298
Unique NameEY680298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680298 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.975e-48
Identity = 114/249 (45.78%), Postives = 134/249 (53.82%), Query Frame = 3
Query:   87 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSXYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPESCRVQKWDSTSDGKHFEILRKEIPNQPGFGGHC*KLS*KGG*KIKNPHGFEFGRKTSPQGAPFDTMG 833
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV G+                                      YGYDPFGL KKP++F+ YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPE+   +      DG       K IP           +   G    +  +G +F  K  P G PFD +G
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGD--------------------------------------YGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHP-GGPFDPLG 210          
BLAST of EY680298 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.076e-11
Identity = 40/115 (34.78%), Postives = 53/115 (46.09%), Query Frame = 3
Query:  267 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSXYQAYELIHARWAMLGAAGFIIPEAFNKF 611
            ++YGPDR  FL  G    ++ PEYLTGE PG+                                      YG+D  GLS  P  F+ Y+  ELIHARWA+LGA G + PE  +++
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGD--------------------------------------YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQY 106          
The following BLAST results are available for this feature:
BLAST of EY680298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB26_ARATH3.975e-4845.78Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE5.076e-1134.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-E12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680298 ID=EY680298; Name=EY680298; organism=Citrus sinensis; type=EST; length=834bp
ATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGCAACACTCTGAAGATG
GCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGA
GATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTC
CAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAG
AAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGT
TAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGC
CCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAA
GTTCCCGGAGAGTAGGATTGTCCTTCTTCTTCCCTTCAGGGCCTCAGATG
ATTTTTCGTGAACATTGTTTAGTTGAATGTTTTTTAAAACATTAATACAT
AATGAATTTTGTTGCTTTAATGCAGCTATGGTTACGATCCTTTTGGTCTC
AGCAAGAAACCAGACGACTTCAGCANATATCAGGCATATGAATTGATTCA
TGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCT
TTAACAAGTTTGGTGCTAACTGTGGTCCTGAAAGCTGTCGGGTTCAAAAA
TGGGACTCTACTTCTGATGGAAAACACTTTGAAATACTTCGGAAAGAAAT
TCCCAATCAACCTGGTTTTGGCGGACATTGCTAAAAATTGTCTTGAAAGG
GGGGGTAAAAAATAAAAAATCCCCACGGGTTTGAATTTGGAAGGAAAACT
TCCCCCCAGGGGGCCCCTTTTGACACCATGGGTA
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