EY680297

Overview
NameEY680297
Unique NameEY680297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.943e-68
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK
Sbjct:    1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 109

HSP 2 Score: 62.7734 bits (151), Expect = 1.943e-68
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAAN 445
            +GEMKGSAITGPIGKECADLWPRIASAAN
Sbjct:  109 KGEMKGSAITGPIGKECADLWPRIASAAN 137
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.534e-68
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAV+VRQRKPWRRKDGVFMYFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAK 109

HSP 2 Score: 62.7734 bits (151), Expect = 2.534e-68
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAAN 445
            +GEMKGSAITGPIGKECADLWPRIASAAN
Sbjct:  109 KGEMKGSAITGPIGKECADLWPRIASAAN 137
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.267e-62
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK
Sbjct:    1 MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 108

HSP 2 Score: 57.7658 bits (138), Expect = 3.267e-62
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAAN 445
            +GEM  SAITGPIGKECADLWPRIASAAN
Sbjct:  108 KGEMNPSAITGPIGKECADLWPRIASAAN 136
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.523e-58
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK 109

HSP 2 Score: 55.4546 bits (132), Expect = 3.523e-58
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAA 442
            +GEMKGSAITGP+ KECADLWPRIAS A
Sbjct:  109 KGEMKGSAITGPVAKECADLWPRIASNA 136
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.808e-58
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK 109

HSP 2 Score: 55.4546 bits (132), Expect = 7.808e-58
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAA 442
            +GEMKGSAITGP+ KECADLWPRIAS A
Sbjct:  109 KGEMKGSAITGPVAKECADLWPRIASNA 136
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.808e-58
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK 109

HSP 2 Score: 55.4546 bits (132), Expect = 7.808e-58
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAA 442
            +GEMKGSAITGP+ KECADLWPRIAS A
Sbjct:  109 KGEMKGSAITGPVAKECADLWPRIASNA 136
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.808e-58
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK 109

HSP 2 Score: 55.4546 bits (132), Expect = 7.808e-58
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAA 442
            +GEMKGSAITGP+ KECADLWPRIAS A
Sbjct:  109 KGEMKGSAITGPVAKECADLWPRIASNA 136
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 7.808e-58
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK 109

HSP 2 Score: 55.4546 bits (132), Expect = 7.808e-58
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAA 442
            +GEMKGSAITGP+ KECADLWPRIAS A
Sbjct:  109 KGEMKGSAITGPVAKECADLWPRIASNA 136
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.808e-58
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK 109

HSP 2 Score: 55.4546 bits (132), Expect = 7.808e-58
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAA 442
            +GEMKGSAITGP+ KECADLWPRIAS A
Sbjct:  109 KGEMKGSAITGPVAKECADLWPRIASNA 136
[Close]
BLAST of EY680297 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 7.808e-58
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   34 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 360
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN K
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK 109

HSP 2 Score: 55.4546 bits (132), Expect = 7.808e-58
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:  359 RGEMKGSAITGPIGKECADLWPRIASAA 442
            +GEMKGSAITGP+ KECADLWPRIAS A
Sbjct:  109 KGEMKGSAITGPVAKECADLWPRIASNA 136
The following BLAST results are available for this feature:
BLAST of EY680297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RL23_ARATH1.943e-6897.2560S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC2.534e-6897.2560S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU3.267e-6290.8360S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE3.523e-5886.2460S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT7.808e-5885.3260S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG7.808e-5885.3260S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE7.808e-5885.3260S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU7.808e-5885.3260S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN7.808e-5885.3260S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN7.808e-5885.3260S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-E11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680297 ID=EY680297; Name=EY680297; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGCAGACGAGAGGAGTGAGCAACAATGTCGAAGCGAGGAAG
GGGAGGATCGGCGGGGAACAAGTTCAGGATGTCGCTGGGTTTGCCGGTGG
CGGCGACGGTGAACTGCGCCGACAACACGGGGGCGAAGAATCTCTACATA
ATATCGGTGAAAGGAATCAAAGGGAGACTCAACCGACTTCCGTCGGCCTG
CGTGGGTGACATGGTCATGGCCACTGTCAAGAAAGGAAAGCCCGATCTGA
GGAAAAAGGTCATGCCAGCTGTCATCGTCCGCCAGCGCAAGCCTTGGCGC
CGAAAGGACGGCGTCTTCATGTACTTTGAAGATAATGCTGGTGTCATCGT
CAACCCTAAGAGGCGAAATGAAAGGATCTGCCATAACTGGACCAATTGGT
AAGGAGTGTGCTGATCTGTGGCCAAGAATTGCAAGTGCTGCCAATGCTAT
TGTCTGAGTGGGGGTTTAAGGGATCTTTTTGGCCTTAGTTTTTTAGGTGA
TCGTAGGGGTCTGTTAATATCATTGGGATCATTTCCTACTGATGAGTGTT
GTGGTTGTTCCTCTATTGCTAGACAGGGATACAAGGAGATTCCAAATTTT
CTACCCAATTCTAATTGTAAAAAAAATTTAATTTTGTGGCTTAAATTCCC
AGGAATTTTTGTTCTTTTAAAGGAAAAAAGTTAAATTTTTTCCAAAAAAA
CAAAAAAAAGGGGGGGGCCTCCTAAGGCATCCAAAGCTTAACTACAGAGT
TGATGGAAAAGGCTACAAACTCTTTAGACCCATTAGCCATGAATCCAATT
TCGCGACGCGTAACTGTGTAAAGCGTCATAGAGGCGGGACAAACCCCTGC
GGATCGAAGATACAAAAACGCAACTATGGAAATAAACCCCCCACTAT
back to top