EY680276

Overview
NameEY680276
Unique NameEY680276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680276 vs. ExPASy Swiss-Prot
Match: FBK30_ARATH (F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.135e-19
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  163 CLTRLPYSTHRLASAVCRRWRQLLQSQDFYYQRKNSGHTHKVACLVQAEKESDGGKKPGESPSYRLSVFDRVGAVWDRIDPVPGYPNGLPLFCQLAGCKGNLVVMGGWEPDSYNPGHRTFFVDEFGMRRWRKGKGFAG 576
            CL R  Y    + ++VCR W + +    F +QRK S H+ ++  L QA  +  G  K   +P YR+SV +    +W  + P+PG   GLPLFC+L     +L+V+GG +P ++   H + FV  F   +WR G    G
Sbjct:   15 CLLRSSYQQFPVIASVCRAWNREVSLSQFLHQRKASRHSQELLILSQARVDPAGSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLPLFCRLVSVGSDLIVLGGLDPITWQ-AHDSVFVFSFLTSKWRVGATMPG 151          
BLAST of EY680276 vs. ExPASy Swiss-Prot
Match: FBK46_ARATH (F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.419e-15
Identity = 50/167 (29.94%), Postives = 78/167 (46.71%), Query Frame = 1
Query:  163 CLTRLPYSTHRLASAVCRRWRQLLQSQDFYYQRKNSGHTHKVACLVQA------------------EKESDGGKKPGE--SPSYRLSVFDRVGAVWDRIDPVPGYP--NGLPLFCQLAGCK--GNLVVMGGWEPDSYNPGHRTFFVDEFGMRRWRKGKGFAGENVFF 591
            CL R+P+       +VCR WR LL    F  +R+  G T  + CLVQ                   EK+S+    P    +P + LSV++   + W R+     +P    +PLFC+    +  G ++++GGW+P++  P  R  +V EF  R+WR+G        FF
Sbjct:   31 CLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLVQPLTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRV----AFPEEEQIPLFCECVVLQDAGKILLIGGWDPETLQP-TRDVYVLEFAGRKWRRGAPMKESRSFF 192          
BLAST of EY680276 vs. ExPASy Swiss-Prot
Match: SKI20_ARATH (F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana GN=SKIP20 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 49/177 (27.68%), Postives = 80/177 (45.20%), Query Frame = 1
Query:  163 CLTRLPYSTHRLASAVCRRWRQLLQSQDFYYQRKNSGHTHKVACLVQ------AEKESDGG--------KKPGES--------------PSYRLSVFDRVGAVWDRIDPVPGYPNGLPLFCQLAGCK--GNLVVMGGWEPDSYNPGHRTFFVDEF----GMRRWRKGKGFAGENVFF 591
            CL R+P+  H    +VCR W+ ++ S+ F  +R   G    + CLVQ      +    +GG        ++ GES              P Y LSV++     W R+      P  +PLFC+    +  G ++++GGW+P++  P    F +D F      RR+R+G+  +    FF
Sbjct:   27 CLVRVPFQFHSSIKSVCRSWKCVISSRSFIKERIGFGKAESLLCLVQPLTSPPSPAMMEGGEMSQKKKEEEEGESQMTQQLLQPRITGTPLYGLSVYNATLDTWHRV----AIPERIPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFVLDFFAGEGSGRRFRRGRPMSAARSFF 199          
The following BLAST results are available for this feature:
BLAST of EY680276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBK30_ARATH1.135e-1934.78F-box/kelch-repeat protein At1g80440 OS=Arabidopsi... [more]
FBK46_ARATH8.419e-1529.94F-box/kelch-repeat protein At2g44130 OS=Arabidopsi... [more]
SKI20_ARATH6.033e-1327.68F-box/kelch-repeat protein SKIP20 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-D01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680276 ID=EY680276; Name=EY680276; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCC
ACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAATC
GAACAATGAAAATGGAATCTTCCGAGTTAATACCGAGTCTCCCTGAAGAG
CTCAGCCTCGAGTGCTTAACCCGCCTCCCTTACTCCACCCATCGCCTCGC
CTCCGCTGTCTGCCGGCGTTGGCGCCAACTCCTTCAAAGCCAAGACTTTT
ACTACCAAAGAAAAAATTCTGGGCACACCCACAAAGTTGCGTGCTTAGTT
CAAGCTGAAAAAGAATCAGACGGTGGCAAAAAACCAGGCGAGTCACCGAG
TTATCGACTCAGCGTGTTCGACCGGGTCGGTGCGGTATGGGACAGGATTG
ACCCGGTACCCGGGTATCCAAATGGGTTGCCGCTCTTTTGTCAGTTGGCG
GGTTGCAAGGGCAACCTTGTGGTGATGGGCGGGTGGGAACCGGATAGTTA
CAACCCGGGTCACCGAACGTTTTTCGTTGACGAATTCGGGATGCGGAGGT
GGCGGAAAGGGAAAGGATTTGCCGGCGAAAATGTCTTTTTCCGGTGGGGA
ATTGGCGGAGGGGCGGGCTAAGGTTGCGGGCCCGGACCAATCAAAATAGG
AACGAGGGGGAGGGAGGGGGGGAGGAAAAGATATGTAATGATGACAACGC
CGGAGCAGCCTACAAGAACTAAGGCAGAGAGCAAAGGAAACGGGGTGGAC
GGGCTCACCCCCCGAGAACCGACCAGAAGCCAGCCTCGCCGAGATCGGCT
GAAAGAAAGGACGAGCCGGAAGCGGACTCGCGCCGCGACAAAGCTCGGGG
ACGGGAGGGCCGACCCGAGGAGGGGGAGCAGGGAGGGGAAGG
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