EY680271 | Citrus Genome Database

Overview


Name	EY680271
Unique Name	EY680271
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	923

Libraries


Library Name	Type
Sweet orange leaf, young greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 8.526e-83
Identity = 142/179 (79.33%), Postives = 160/179 (89.39%), Query Frame = 1

Query:   34 MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSK 570
            M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGT           +KSNSFVE VS KIRRQIEELER+SG+ES++L+VDGVPVD+YLTRFVWDEAKYPTMSPL+E+VD I + VAKIEDDLKVRVAEYNN+R QLNAINRKQSGSLAVRDLSNLVKPEDI+ S+
Sbjct:    1 MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKSNSFVEGVSQKIRRQIEELERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEVVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESE 179

HSP 2 Score: 40.0466 bits (92), Expect = 8.526e-83
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 2

Query:  569 KHLVTLLAVVPQYSQKDWL 625
            +HLVTLLAVVP+YSQKDWL
Sbjct:  179 EHLVTLLAVVPKYSQKDWL 197

HSP 3 Score: 21.9422 bits (45), Expect = 8.526e-83
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  627 ANYETLNSYVVPQ 665
            A YETL  YVVP+
Sbjct:  198 ACYETLTDYVVPR 210

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.135e-68
Identity = 121/184 (65.76%), Postives = 145/184 (78.80%), Query Frame = 1

Query:   34 MASRYWVVSLPV--QNSAA---SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSK 570
            MA+RYW+ +LPV   N AA   ++W RLQE IS+HSFDTPLYRF +P+LR GT           VKSN F+E VSHKIRRQIE+LER  G+E  +L+VDGVPVD+YLTRFVWDE KYP  +PL+E V  I + VAKIEDD+KVRVAEY NV+SQL AINRKQ+GSLAVRDLSNL+KPED++TS+
Sbjct:    1 MATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVPDLRPGTLDSLLALSDDLVKSNIFIEGVSHKIRRQIEDLERAGGVEPGTLTVDGVPVDSYLTRFVWDEGKYPVNAPLKETVASIQSQVAKIEDDMKVRVAEYGNVKSQLGAINRKQTGSLAVRDLSNLIKPEDMVTSE 184

HSP 2 Score: 38.5058 bits (88), Expect = 7.135e-68
Identity = 15/19 (78.95%), Postives = 19/19 (100.00%), Query Frame = 2

Query:  569 KHLVTLLAVVPQYSQKDWL 625
            +HLVTLL++VP+YSQKDWL
Sbjct:  184 EHLVTLLSIVPKYSQKDWL 202

HSP 3 Score: 21.1718 bits (43), Expect = 7.135e-68
Identity = 7/13 (53.85%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  627 ANYETLNSYVVPQ 665
            A+YE+L+++VVP+
Sbjct:  203 ASYESLDTFVVPR 215

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC1_PONAB (V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.388e-26
Identity = 60/175 (34.29%), Postives = 96/175 (54.86%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFV 176

HSP 2 Score: 28.1054 bits (61), Expect = 1.388e-26
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDWL 625
            L  ++LVTLL VVP+ +  DW+
Sbjct:  177 LDSEYLVTLLVVVPKLNHNDWI 198

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC1_MACFA (V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.388e-26
Identity = 60/175 (34.29%), Postives = 96/175 (54.86%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFV 176

HSP 2 Score: 28.1054 bits (61), Expect = 1.388e-26
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDWL 625
            L  ++LVTLL VVP+ +  DW+
Sbjct:  177 LDSEYLVTLLVVVPKLNHNDWI 198

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC1_HUMAN (V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 1.388e-26
Identity = 60/175 (34.29%), Postives = 96/175 (54.86%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFV 176

HSP 2 Score: 28.1054 bits (61), Expect = 1.388e-26
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDWL 625
            L  ++LVTLL VVP+ +  DW+
Sbjct:  177 LDSEYLVTLLVVVPKLNHNDWI 198

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC1_BOVIN (V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.985e-26
Identity = 59/175 (33.71%), Postives = 96/175 (54.86%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFV 176

HSP 2 Score: 28.1054 bits (61), Expect = 3.985e-26
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDWL 625
            L  ++LVTLL VVP+ +  DW+
Sbjct:  177 LDSEYLVTLLVVVPKLNHNDWI 198

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VTC1A_DANRE (V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.186e-26
Identity = 59/175 (33.71%), Postives = 100/175 (57.14%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W++L    ++ +  +   +FNIP+L+VGT            K ++FVESV  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V++I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWDKLMTATTRTNNLSTNNKFNIPDLKVGTLDVLVGLSDELAKLDAFVESVVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYVTRFQWDMAKYPIKQSLKNISEIISKQVSQIDNDLKARASAYNNLKGNLQNLERKNAGSLLTRSLADIVKKDDFV 176

HSP 2 Score: 25.7942 bits (55), Expect = 5.186e-26
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDW 622
            L  ++L+TLL VVP+ +  DW
Sbjct:  177 LDSEYLITLLVVVPKTNYTDW 197

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC1_RAT (V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.187e-26
Identity = 59/175 (33.71%), Postives = 95/175 (54.29%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L   GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFV 176

HSP 2 Score: 28.1054 bits (61), Expect = 5.187e-26
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDWL 625
            L  ++LVTLL VVP+ +  DW+
Sbjct:  177 LDSEYLVTLLVVVPKLNHNDWI 198

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC1_MOUSE (V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4)

HSP 1 Score: 111.309 bits (277), Expect = 5.187e-26
Identity = 59/175 (33.71%), Postives = 95/175 (54.29%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L   GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFV 176

HSP 2 Score: 28.1054 bits (61), Expect = 5.187e-26
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDWL 625
            L  ++LVTLL VVP+ +  DW+
Sbjct:  177 LDSEYLVTLLVVVPKLNHNDWI 198

[Close]

BLAST of EY680271 vs. ExPASy Swiss-Prot
Match: VATC1_XENTR (V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.937e-25
Identity = 58/175 (33.14%), Postives = 96/175 (54.86%), Query Frame = 1

Query:   40 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDII 561
            + +W++S P + +    W +L    +K++  +   +FNIP+L+VGT            K ++FVE    K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D +
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLMAATTKNNNLSTNAKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGTVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKARASAYNNLKGNLQNLERKNAGSLITRSLAEIVKKDDFV 176

HSP 2 Score: 26.5646 bits (57), Expect = 1.937e-25
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 2

Query:  560 LPPKHLVTLLAVVPQYSQKDWL 625
            L  ++L+TLL VVP+ +  DW+
Sbjct:  177 LDSEYLITLLVVVPKNNYNDWV 198

The following BLAST results are available for this feature:

BLAST of EY680271 vs. ExPASy Swiss-Prot

BLAST of EY680271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22


Match Name	E-value	Identity	Description
VATC_ARATH	8.526e-83	79.33	V-type proton ATPase subunit C OS=Arabidopsis thal...	[more]
VATC_HORVU	7.135e-68	65.76	V-type proton ATPase subunit C OS=Hordeum vulgare ...	[more]
VATC1_PONAB	1.388e-26	34.29	V-type proton ATPase subunit C 1 OS=Pongo abelii G...	[more]
VATC1_MACFA	1.388e-26	34.29	V-type proton ATPase subunit C 1 OS=Macaca fascicu...	[more]
VATC1_HUMAN	1.388e-26	34.29	V-type proton ATPase subunit C 1 OS=Homo sapiens G...	[more]
VATC1_BOVIN	3.985e-26	33.71	V-type proton ATPase subunit C 1 OS=Bos taurus GN=...	[more]
VTC1A_DANRE	5.186e-26	33.71	V-type proton ATPase subunit C 1-A OS=Danio rerio ...	[more]
VATC1_RAT	5.187e-26	33.71	V-type proton ATPase subunit C 1 OS=Rattus norvegi...	[more]
VATC1_MOUSE	5.187e-26	33.71	V-type proton ATPase subunit C 1 OS=Mus musculus G...	[more]
VATC1_XENTR	1.937e-25	33.14	V-type proton ATPase subunit C 1 OS=Xenopus tropic...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-650-009-C08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY680271 ID=EY680271; Name=EY680271; organism=Citrus sinensis; type=EST; length=923bp
CAGAGCGAAAGTGAGAGTGAAAGTGATCGTGAAATGGCATCAAGGTACTG
GGTGGTGTCTCTTCCAGTACAAAATTCAGCCGCTTCTGTTTGGAATCGAT
TACAGGAACAAATCTCTAAACATTCATTTGACACTCCTCTTTACAGGTTT
AATATCCCCAACCTCCGTGTTGGAACCCTAGATTCACTCCTTGCACTTAG
CGATGATCTCGTGAAGTCAAATAGCTTTGTTGAATCAGTATCTCACAAGA
TCAGGCGACAGATTGAGGAACTGGAGAGGGTATCAGGCATAGAGAGTAGT
TCTTTGAGTGTTGATGGAGTACCAGTTGATACTTATCTCACTAGGTTTGT
TTGGGATGAAGCAAAGTACCCAACTATGTCACCTTTAAGGGAAATTGTGG
ATGGCATTCATACTCTTGTGGCAAAGATTGAAGACGATCTTAAGGTTCGT
GTTGCTGAGTATAATAATGTCCGCAGTCAGCTGAATGCTATTAATCGAAA
GCAAAGTGGAAGCTTAGCTGTTCGTGATCTTTCCAATCTGGTAAAACCAG
AAGATATCATTACCTCCAAAACATCTTGTAACCCTTCTTGCTGTTGTCCC
CCAGTACTCCCAAAAGGATTGGTTGGGCTAACTATGAAACTTTGAATAGC
TATGTGGTCCCCCAGGTCCTCCAAGCTATTGGTATAAGGAAAAGGAATAA
GCCCCTTTAAACTGGTCCCACTATTTTGAAACTGTTTTGCAAAAAATTTC
AAAAATAATCTGCCACGTGAGAAAAGGCGTTCCAAATTCTCTGAATTTTA
AAAAATGATTTTCAAAACAACAAAAAAAAACCTACATTCAGGGAATTGGG
AAAAACAATTTTCCACCACAACCAACAAAAGCTCTGAAAAACCCCTTCTT
TTTTGCCGAGGTGGCGCCGAAAC