EY680270

Overview
NameEY680270
Unique NameEY680270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 317.775 bits (813), Expect = 5.462e-86
Identity = 165/187 (88.24%), Postives = 171/187 (91.44%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 562
            E+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY
Sbjct:  415 EKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 1.030e-84
Identity = 165/186 (88.71%), Postives = 169/186 (90.86%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 559
            E+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK+TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN KYGYNAATG YEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE A P GNPMDNSGYG
Sbjct:  409 EKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.375e-81
Identity = 155/187 (82.89%), Postives = 169/187 (90.37%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 562
            E+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL++KVDAIK+TL+NDE+KVGA+IV+RALCYPLKLIAKNAGVNGSVV+EKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFL SD VVVEIKEPE A P  NPMDNSG+GY
Sbjct:  314 EKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.210e-78
Identity = 152/172 (88.37%), Postives = 157/172 (91.28%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 517
            E+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK  LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP
Sbjct:  415 EKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.108e-62
Identity = 129/180 (71.67%), Postives = 146/180 (81.11%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 532
            E+EKLNERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNATKAA          CTLLRLS KVD+IKETL N+E+K+GADI+KRAL YP+KLIA NAG NGSVV ++V+ + D   YGYNAAT  +EDLM AGIIDPTKVVRC LE+A SVAKTFL++D VV EI  KE  PA  AG
Sbjct:   76 EKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVIGGGCTLLRLSQKVDSIKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAPAPAAG 255          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.268e-58
Identity = 121/188 (64.36%), Postives = 146/188 (77.66%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 562
            EREKL ERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNAT+AA          CTLLRLS KVD IK  + + E+++GADI+KRALCYP+KLIA+NAGVNGSVV  +V+ + D   YGYNAAT ++E+LM  GIIDP+KVVRC +E+A SVAKTFL++D VV E+KE E A    NP+     G+
Sbjct:  245 EREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIE-AGAKPNPVAPGAAGF 431          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.243e-47
Identity = 107/184 (58.15%), Postives = 132/184 (71.74%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 553
            + EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +EEK+GADIVKRAL  PL+ IA NAGV GSV+  +V  SD    GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  359 DSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSD-FNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.930e-47
Identity = 103/184 (55.98%), Postives = 130/184 (70.65%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 553
            +REKL ERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL L+S + +++ +L   +EK+G +IV RAL  PL+ IA NAG  GSVV EK+   D   +GYNA TG YEDL+A+GI+DP KVVR  L+ A+SVA   L ++ +VV+  EPEPAMPAG  M   G
Sbjct:  360 DREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGVVPGGGTTLLHLASALTSLQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKD-FNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVLVVDQPEPEPAMPAGGDMGGMG 542          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.827e-47
Identity = 102/175 (58.29%), Postives = 129/175 (73.71%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 526
            ++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ LS+KV+ +K +L+N+EEK+GADIV+RAL  PL  IA N+GV GSV+ EKV S+D    GYN  TG YEDL+AAGI+DP  VVR  L++A S+A   L ++ VVVE  E + A P
Sbjct:  359 DKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTD-FSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVEKPEKKGAAP 532          
BLAST of EY680270 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.998e-47
Identity = 106/184 (57.61%), Postives = 131/184 (71.20%), Query Frame = 2
Query:    2 EREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 553
            + EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+  D +EEK+GADIVKRAL  PL+ IA NAG  GSV+  +V  SD    GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  359 DSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKDSD-FNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKSAAPADAGMGGMG 540          
The following BLAST results are available for this feature:
BLAST of EY680270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH5.462e-8688.24RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA1.030e-8488.71RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE2.375e-8182.89RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA3.210e-7888.37RuBisCO large subunit-binding protein subunit beta... [more]
RUBC_CHLRE1.108e-6271.67RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE1.268e-5864.36RuBisCO large subunit-binding protein subunit beta... [more]
CH602_ANAVT2.243e-4758.1560 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_SYNP62.930e-4755.9860 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH601_TRIEI3.827e-4758.2960 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANASP4.998e-4757.6160 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-C07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680270 ID=EY680270; Name=EY680270; organism=Citrus sinensis; type=EST; length=904bp
TGAAAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTG
CTGTCATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAG
TTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGG
TATCGTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGG
ATGCCATTAAGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAGAT
ATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGC
CGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATC
ATAAATATGGATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCT
GCAGGAATTATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGC
TTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGA
TCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCA
GGATATGGATACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAA
GGTTCTGACTTCGTTATAGCAACCTATCTTTCAGTTTGGACAGCGTTGGG
GTCTCTTTCCTCTTGGTAAATTCATTTACTCCACTTAATAAAAGTTTAGG
GATTCGGGGGGAGGATAACTTGGCCAAAATACGGGCTCGATTTATTTTGG
CAATTAAAAGGTACATTGGGATGGTTTTGGAATTTTTTGGGTGGAAGAAA
ATTTTTTTTTGCCCCCTCCCCCTTCCACAGTCGGAAGCTAATTTTGGCGG
GGGACCTCATTTTTTTTTCGGGTTACGGGGTTCCCCGCGGCTTTAAATAG
TTTA
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