EY680265

Overview
NameEY680265
Unique NameEY680265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.272e-45
Identity = 89/134 (66.42%), Postives = 106/134 (79.10%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWG 413
            L+ + WGVNVQPYS ++ANFA +TGLL P DRIMGLD PSGGHL+HGY T   KK+SA SIFFES PY+VN +TGY+DY K+E  A  +RPK+LI G S+YPREWDY R R+IADK GA L+CDMA I G+V G
Sbjct:  114 LNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTDK-KKISATSIFFESMPYQVN-ETGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAG 245          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 88/133 (66.17%), Postives = 102/133 (76.69%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLV 407
            RLD   WGVNVQPYS + ANFAVYT LL P DRIMGLD PSGGHL+HGY T   KK+SA+SIFFES PY++    G IDY++LEE A+ ++PK++I G S+YPREWDY R R IADK GA LMCDMA   GLV
Sbjct:   89 RLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQT-DKKKISASSIFFESMPYQIGAD-GLIDYQRLEENALLFKPKLIISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLV 219          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.534e-42
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            +LD   WGVNVQPYS + ANFAVYT L+ P  RIMGLD P GGHL+HG+ T G KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + PK++I G S Y R  DY R R+IAD+ GA LM DMA I GLV  G
Sbjct:  105 KLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-GKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENGAYLMADMAHISGLVAAG 239          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.483e-41
Identity = 86/135 (63.70%), Postives = 98/135 (72.59%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            LD   WGVNVQPYS + ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES  YKVNP TGYIDY++LEE A  + PK++I G S Y R  DYGR R+IAD+ GA LM DMA I GLV  G
Sbjct:  106 LDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAG 239          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 9.435e-41
Identity = 84/135 (62.22%), Postives = 98/135 (72.59%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            LDS  WGVNVQPYS + ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + P+++I G S Y R  DY R R+IAD  GA LM DMA + GLV  G
Sbjct:  106 LDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAG 239          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.232e-40
Identity = 84/136 (61.76%), Postives = 99/136 (72.79%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            +LD   WGVNVQPYS + ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + PK++I G S Y R  +Y R R+IAD+ GA LM DMA I GLV  G
Sbjct:  105 KLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAG 239          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.609e-40
Identity = 84/135 (62.22%), Postives = 98/135 (72.59%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            LD + WGVNVQPYS + ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + P+++I G S Y R  DY R R+IAD  GA LM DMA I GLV  G
Sbjct:  106 LDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAG 239          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 6.116e-40
Identity = 84/135 (62.22%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            LD   WGVNVQPYS + ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKV P+TGYI+Y++LEE A  + PK++I G S Y R  DY R R+IAD  GA LM DMA I GLV  G
Sbjct:  100 LDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAG 233          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.964e-39
Identity = 80/138 (57.97%), Postives = 99/138 (71.74%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            RLD+  WGVNVQP S + ANF VYT LL   DRIM LD P GGHLSHGY T   KK+SA SIFFE+ PY++N  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ DK  A+L+ DMA I GLV  G I
Sbjct:  135 RLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVI 271          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.964e-39
Identity = 80/138 (57.97%), Postives = 99/138 (71.74%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            RLD   WGVNVQP S + +NF VYT LL P DRIM LD P GGHLSHGY T   KK+SA SIFFE+ PY+++  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ DK  AVL+ DMA I GLV  G I
Sbjct:  135 RLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVI 271          
The following BLAST results are available for this feature:
BLAST of EY680265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI1.272e-4566.42Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI2.399e-4466.17Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_PONAB6.534e-4263.24Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_RABIT2.483e-4163.70Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_BOVIN9.435e-4162.22Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_HUMAN1.232e-4061.76Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_SHEEP1.609e-4062.22Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_MOUSE6.116e-4062.22Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYN_FLAPR3.964e-3957.97Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_PEA3.964e-3957.97Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-C01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680265 ID=EY680265; Name=EY680265; organism=Citrus sinensis; type=EST; length=931bp
CCCGCGTCCGTCTTGATAGCGATAATTGGGGAGTCAACGTTCAGCCATAT
TCATGTACCTCTGCAAATTTCGCCGTCTATACGGGTCTTTTGTTGCCTGG
GGATAGAATTATGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACG
GCTACCATACACCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTT
GAGAGTTTTCCTTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGA
AAAGCTGGAGGAGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTG
GTGGGAGTTCATATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATT
GCAGATAAGTGTGGTGCAGTTTTGATGTGTGATATGGCTCAAATTCCTGG
GCTCGTGTGGGGGGGGGGAATTGCACAGTCCATTTGACTAATGGAGATAT
CGGGACTTCCCCACACTCCAAAACACTCTGTCAAGGTCCTAGCCGAAGAG
CACCTTTTCGTGAAGAACAGGAAAAAACAACAGCGAAACAGCAGAGTAAC
GGCGGGGCAGAGACAACGGAGGAGGGCGCTGAGAATGCAAAACGGAGACG
AGCGGCTGCGGGGCGCGGACGAGGAGAGAAGACGAGGGGCGCCGGCGTCG
CCACCGCCGGCCGCCCCTACGCCTCCCGAGCGGGGGTGCCCCCGCGCCTC
CACTGACAGGAGCCACGACAGACGCAAAGCGGACCAGAACGAGACCACAA
CGAAAGAGTAAACCGGGATCACCAACACACAGAGACGCAATGCAAGCGAG
GACAAAGGAAGGCGGCCTACACGCACAGTAAGCGCAGCGGTGGAACCAGC
AGCAGAGAGGGAAGGAAGTACAGGGACCACGGATGAGAGCCCCCCCGGAC
AAGGGAGACGAGCGCGCGGCGCCGACGGAAC
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