EY680262

Overview
NameEY680262
Unique NameEY680262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.923e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  196 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.923e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.279e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  141 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.279e-32
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 2
Query:    5 ASADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            A ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  178 ALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.279e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  190 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.283e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.594e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.594e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.594e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  201 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.594e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            A+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of EY680262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_ORYSJ1.923e-32100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.923e-32100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_CUCSA3.279e-3298.48Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_SOYBN3.279e-3297.06Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_CUCSA3.279e-3298.48Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP4.283e-3298.48Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC5.594e-3298.48Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC5.594e-3298.48Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP5.594e-3298.48Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL5.594e-3298.48Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-B10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680262 ID=EY680262; Name=EY680262; organism=Citrus sinensis; type=EST; length=499bp
CCACGCGTCCGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGG
AAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTT
CAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTT
GGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCC
CCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATT
GAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTG
AATTATGTAATGTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATT
CAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTG
TGCCAGAATCTAGTTACAAGTTTACATCACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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