EY680258

Overview
NameEY680258
Unique NameEY680258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.729e-60
Identity = 113/155 (72.90%), Postives = 133/155 (85.81%), Query Frame = 2
Query:   77 MGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELASSL 541
            MGSD+EAE++  K++KK  ++LAPIAKPLAGKKL KRT KL+++AA  KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L  EE  KLK DY  V +D+KELA+S+
Sbjct:    1 MGSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.514e-34
Identity = 73/160 (45.62%), Postives = 112/160 (70.00%), Query Frame = 2
Query:   77 MGSDSEAERTPHKDEKK---------KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 529
            MG D++     HK+ K+         ++ ++ P AKPLA KKL+K+ LK V++A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+  +PYI++ SK+DL  AGATKRPT  V ++    K + G+ ++++ K  +  VV++V+ L
Sbjct:    1 MGKDNKE----HKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.785e-31
Identity = 63/131 (48.09%), Postives = 98/131 (74.81%), Query Frame = 2
Query:  137 SLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 529
            +L PIAKPLA KKL+K+ +K V++A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y  SKE L  A  TKRPT CV+++    K ++ + E+   K  Y  ++++V  L
Sbjct:   24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.384e-28
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 2
Query:   68 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 436
            K K     E   TP K   + +  L PIAKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KAKKEESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.434e-27
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 2
Query:   68 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 436
            K K     E   TP K   + +  L P+AKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KVKKEECEEVPETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 65/154 (42.21%), Postives = 93/154 (60.39%), Query Frame = 2
Query:   68 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 529
            KK+   + E   T  K  ++ I ++ PIA PLA +KLSK+  K V++AA+ K ++RGVKEV K I +G  G+ V AG+  PIDV  H+PI+CE+  +PY YV SK DL ++  +KRPTC +++  KP          D+ K  Y   VE+V  L
Sbjct:    5 KKEKAGEEETGGT-EKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.339e-25
Identity = 55/125 (44.00%), Postives = 87/125 (69.60%), Query Frame = 2
Query:   83 SDSEAERTPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 451
            ++  A  T  KDE + +  L  PIA+PLA +KL+K+  KL+++AA   K L+ G+K+V K +R+  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   19 AEDVAALTTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.748e-25
Identity = 60/141 (42.55%), Postives = 94/141 (66.67%), Query Frame = 2
Query:   71 KKMGSDSEAERTPHKDE---KKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 484
            K    +SEA+     +E   K+ +V+L PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P+LCE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP   E  QE  DK
Sbjct:    5 KAAPEESEAQAEGCSEERTYKELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.895e-25
Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 2
Query:  104 TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 451
            T  KDE + +  L  PIA+PLA +KL+K+  KL+++A A  K L+ G+K+V K +RR  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of EY680258 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.895e-25
Identity = 59/150 (39.33%), Postives = 96/150 (64.00%), Query Frame = 2
Query:   53 EREN*KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYT 502
            E+E  ++  G+  + ER      +     + PIA PLA +KL+KR  K V++A++ K +++G+++V K I++G +G+ +IAG+ +PI+V  H+P++CE++ IPY YV +K+DL  A  +KRPTCCVL+  KP   E  Q   D+   D T
Sbjct:   12 EKEEHEESGGNKEDRERA----YEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVT 153          
The following BLAST results are available for this feature:
BLAST of EY680258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
NHP2_ARATH3.729e-6072.90H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_YEAST3.514e-3445.63H/ACA ribonucleoprotein complex subunit 2 OS=Sacch... [more]
NHP2_SCHPO2.785e-3148.09H/ACA ribonucleoprotein complex subunit 2 OS=Schiz... [more]
NHP2_XENTR8.384e-2847.97H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_XENLA5.434e-2747.15H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DANRE7.847e-2642.21H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_CAEBR1.339e-2544.00Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_MOUSE1.748e-2542.55H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
NHP2_CAEEL3.895e-2546.61Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_BRABE3.895e-2539.33H/ACA ribonucleoprotein complex subunit 2-like pro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-B05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680258 ID=EY680258; Name=EY680258; organism=Citrus sinensis; type=EST; length=875bp
CGGACGCGTGGGTGAAAAAGAAAAACCCTAGCTCTGTTTCGTGCAATTCA
TTGAGAGAGAGAACTGAAAGAAGAAAATGGGAAGCGACAGCGAAGCAGAG
AGAACCCCACATAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCAT
TGCTAAACCTCTAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTG
TCCGTCGAGCTGCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTG
GTCAAAAGTATCCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAA
CATTAGTCCAATTGACGTCATCACTCACGTTCCTATCTTATGTGAAGAGT
CTGATATTCCCTACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCA
GGTGCCACAAAGAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAAC
TAAGGGAGAACTAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATA
CCCTCGTTGTAGAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGATGA
ACTAGACTTAAAGCCAACAAAGATGATTGTACTTACAGATATGTTTGATT
TCGAACCTTCCCTTTCTAGCTGAGTAATGTACTCTAGTTTTGTCGAATGT
AATATGCAGTTTGTCTCTGTTGCATGAGATGGGTGGGGTGTCATGTCTCT
CATATCTGGGTATATGGCCTTTTTTTTTTTTTTTTTAAGAAGCAAACTGC
GAAATAATCTAAATTTTTAGTGCCAATCCCCTGGAAATTTTTGTTGGTAT
AATTTCTTTTATGGCCCTTATTTCCCTTTCCCAGCCAATTTTTACGGGGA
ATTAATTTCCCGGGGAAACCCGGCT
back to top