EY680248

Overview
NameEY680248
Unique NameEY680248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.442e-48
Identity = 115/238 (48.32%), Postives = 137/238 (57.56%), Query Frame = 2
Query:   77 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPT-LLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHAN--IEMGKVVFLSRDGNKFQNWGDLP 781
            KSG+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPDM KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLK                             PT L+ +K + L           L    P  Q       P        +G+VV+GPAPLSLALAH +  +E GKVVF+      F+  GD P
Sbjct:   18 KSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPDMSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLK---------------------------GDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRT-GDAP 227          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.231e-47
Identity = 113/238 (47.48%), Postives = 144/238 (60.50%), Query Frame = 2
Query:   77 KSGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANI-EMGKVVFLSRDGNKFQNWGDLP 781
            +S +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA+SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLK           ++LV E                  KT   + + ++ + L   V  P  +       P        +G+VV+GPAPLSLALAHA+I E GKV+F+      F+  GD P
Sbjct:   16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGALSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLK--------GDPTYLVVEND----------------KTLATYGINAVCTHLGCVV--PWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRT-GDAP 226          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 8.775e-44
Identity = 109/237 (45.99%), Postives = 139/237 (58.65%), Query Frame = 2
Query:   77 KSGMFCPSRAFLVKPARTQMVTKNPM--GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANIEMGKVVFLSRDGNKFQNWGDLP 781
            K+GMF PS A L K  R  ++       GMK+ CQATSIPAD VPDM KR+ +NLLLLGA+SLPTG+ML+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLK           ++LV E                  KT     + ++ + L   V  P          P        +G+VV+GPAPLSLALAH +++ GKVVF+      F+  G+ P
Sbjct:   18 KNGMFAPSLA-LAKAGRVNVLISKERIRGMKLTCQATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLK--------GDPTYLVVESD----------------KTLATFGINAVCTHLGCVV--PFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRT-GEAP 226          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.775e-44
Identity = 105/222 (47.30%), Postives = 129/222 (58.11%), Query Frame = 2
Query:   77 KSGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANI-EMGKVVFL 739
            K+G + PSRA L K AR     K  +  K+ CQATSIPADRVPDMGKRQ MNLLLLGA+SLPT  ML+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+          +  +  +RSL                T  ++ + + L  +      P  +       P        +GKVV+GPAPLSLAL+H +I E GKVVF+
Sbjct:   19 KNGAYSPSRALLGKTARGLYPEKEMVSRKVTCQATSIPADRVPDMGKRQTMNLLLLGALSLPTAGMLIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLR------GDPTYLVVENDRSL---------------ATYGINAVCTHLGCVV-----PWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFV 214          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.401e-41
Identity = 107/226 (47.35%), Postives = 135/226 (59.73%), Query Frame = 2
Query:   77 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANIEMGKVVFL 739
            KSG+   S+  L+KP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLK           ++LV E                   T   + + ++ + L   V  P          P        +G+VV+GPAPLSLALAHA+I+ GKVVF+
Sbjct:   16 KSGLSSVSQCLLLKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK--------GDPTYLVVEND----------------GTLATYGINAVCTHLGCVV--PFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFV 212          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 5.323e-41
Identity = 106/226 (46.90%), Postives = 133/226 (58.85%), Query Frame = 2
Query:   77 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANIEMGKVVFL 739
            KSG+   S+  LVKP +   +  + +G    MK+KC ATSIPAD RVPDM KR LMNLLLLGA+SLPT  MLVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLK           ++LV E                   T   + + ++ + L   V  P          P        +G+VV+GPAPLSLALAHA+I+ GKVVF+
Sbjct:   16 KSGLSSVSQCLLVKPMK---INSHGLGKDKRMKVKCMATSIPADDRVPDMEKRNLMNLLLLGALSLPTAGMLVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLK--------GDPTYLVVEND----------------GTLATYGINAVCTHLGCVV--PFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFV 212          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.023e-40
Identity = 111/240 (46.25%), Postives = 135/240 (56.25%), Query Frame = 2
Query:   77 KSGMFCPSRAFLVKPARTQMVTKNPMG----MKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANIEMGKVVFLSRDGNKFQNWGDLP 781
            KSG+   S+A LVKP +   +  + MG    MK KC A SIPAD RVPDM KR LMNLLLLGA++LPTG MLVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLK           ++LV E                   T   + + ++ + L   V  P          P        +GKVV+GPAPLSLALAHA+I+ GKVVF+      F+  GD P
Sbjct:   18 KSGVSSVSQALLVKPMK---INGHGMGKDKRMKAKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLK--------GDPTYLVVEND----------------GTLATYGINAVCTHLGCVV--PWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRT-GDSP 227          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.473e-38
Identity = 104/234 (44.44%), Postives = 131/234 (55.98%), Query Frame = 2
Query:   92 CPSRAFLVKPARTQMVTKNPM---GMKIKCQA-TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANIEMGKVVFLSRDGNKFQNWGDLP 781
            C SRA L KP +     +  +      I CQA +SIPADRVPDMGKRQLMNLLLLGA+SLPT  MLVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLK           ++LV E                  KT   + + ++ + L   V  P          P        +G+VV+GPAPLSLAL HA+++ GKV+F+      F+  GD P
Sbjct:   16 CRSRASLGKPVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLK--------GDPTYLVVEAD----------------KTLATYGINAVCTHLGCVV--PWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRT-GDNP 222          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.065e-37
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  505 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSTENKFICPCHGSQYNNQGK 663
            GDPTYL+V+   ++  YGINA+CTHLGCVVPWN+  NKF+CPCHGSQY+  GK
Sbjct:   85 GDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGK 137          

HSP 2 Score: 87.0409 bits (214), Expect = 1.065e-37
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  179 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 427
            T I A  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GND+ A+ WL  H  GDR+L +GLK
Sbjct:    2 TQISAKDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPKASGAGGGTTAKDELGNDVTASGWLADHKEGDRSLVQGLK 84          
BLAST of EY680248 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.149e-35
Identity = 99/231 (42.86%), Postives = 123/231 (53.25%), Query Frame = 2
Query:   92 CPSRAF-LVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKLIL*THSLDAWSFLVRERSLYK*IHREIQPTLLWKKTKHLHHMESMLSALTLDVWCPGIQLRTSSSVPATDPNTITKGKVVKGPAPLSLALAHANIEMGKVVFLSRDGNKFQNWGDLP 781
            C +RA  L KP +     +  +   I C A SI ADRVPDM KR+LMNLLLLGA+SLPT  MLVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLK           ++LV E                  KT   + + ++ + L   V  P          P        +GKVV+GPAPLSLAL HA+++ GKVVF+      F+  GD P
Sbjct:   16 CRTRASSLCKPVKGLGFGRERIPRNITCMAGSISADRVPDMSKRELMNLLLLGAISLPTFGMLVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLK--------GDPTYLVVESD----------------KTLATYGINAVCTHLGCVV--PWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRT-GDNP 219          
The following BLAST results are available for this feature:
BLAST of EY680248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
UCRIA_PEA3.442e-4848.32Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ARATH2.231e-4747.48Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_SPIOL8.775e-4445.99Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG8.775e-4447.30Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC1.401e-4147.35Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_TOBAC5.323e-4146.90Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU2.023e-4046.25Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ2.473e-3844.44Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNR31.065e-3767.92Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_WHEAT1.149e-3542.86Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-A06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680248 ID=EY680248; Name=EY680248; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGCCCACGCGTCCGTGGCTTCCTCCTCTTCTCTCTCCTCAG
CAACTCCTTCTCAGCTATGCTCAAGCAAGAGTGGTATGTTCTGTCCATCG
AGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAAGAATCC
AATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTGATAGAG
TGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCTTGGGTGCT
GTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTTCTTTGC
CCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATGCCA
TTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCTGGG
GACCGAACCCTCACCGAAGGATTGAAGCTCATATTGTGAACTCATTCCCT
TGATGCATGGAGTTTTCTCGTACGTGAAAGGTCGCTCTACAAGTAGATTC
ATAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCCTGG
AATTCAACTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
TAACCAAGGGAAAAGTTGTGAAAGGGCCTGCTCCATTGTCATTGGCATTG
GCTCATGCCAACATTGAAATGGGTAAGGTAGTCTTCCTTTCCAGGGACGG
AAACAAATTTCAAAACTGGGGAGACCTCCCTGGGGGGGTTTAAACTTTGT
TCCCGGGGCCGGGGCTTTTCAAAATTCAAGTTTTGGGCGGGGCGGGTTTG
GTTTTGCGCAAAGGGAAAAAAAATAACGGGAAAAGGAAAAATGGCTTTTT
TA
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