EY680239

Overview
NameEY680239
Unique NameEY680239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.806e-39
Identity = 68/84 (80.95%), Postives = 78/84 (92.86%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 263
            PCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:   97 PCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.078e-36
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 257
            PCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   95 PCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.378e-35
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:   97 PCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.800e-35
Identity = 64/82 (78.05%), Postives = 75/82 (91.46%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 257
            PC+EFELE G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   95 PCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.350e-35
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:  100 PCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.350e-35
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:  100 PCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.070e-35
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 263
            PCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:   99 PCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.838e-35
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 257
            PC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:   95 PCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.838e-35
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 257
            PC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   95 PCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.838e-35
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 257
            PC+EFELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   95 PCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY680239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RBS_LACSA7.806e-3980.95Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA8.078e-3679.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL1.378e-3579.52Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS1A_ARATH1.800e-3578.05Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_PYRPY2.350e-3578.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP2.350e-3578.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE3.070e-3577.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_RAPSA6.838e-3576.83Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA6.838e-3576.83Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA6.838e-3576.83Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680239 ID=EY680239; Name=EY680239; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATC
GGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAA
GCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAA
TATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAAT
GGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCT
CAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATATA
TTTTAATAATTGANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAAACAAAAAAAACCAACAAAACAATAAANAACAA
CAAACAAAAAAAAAAAACAAGGGGGCGCCCCCTTAAAAGAAACAAACTTA
AAAATACCGGGGGAGGGAACGACAAAACTCTTTTATAAGGGCACACCCAA
ATATAATTCCGGGGGCGCCTTTTTTAAACCGCCGGAGGGGGGGAAAACCC
CGGGGGTTCCCCCAATTTAATCGCCCTTGGCCACAACCCCCCCCTTTTCC
CCCGGGGGGGAAAATACAAAAAAAGCCCCCCCCCCATCTCCCCTCCCCCA
AAATTTGCCCCCCCCCGATGGGGACAAAGGGAACCCCCCCCTTTTTCGCC
CCCTATAAC
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