EY680238

Overview
NameEY680238
Unique NameEY680238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680238 vs. ExPASy Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 7.509e-64
Identity = 120/192 (62.50%), Postives = 152/192 (79.17%), Query Frame = 2
Query:   86 MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETE 658
            M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R   SP+A M+++D E E
Sbjct:   41 MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAEEE 232          
BLAST of EY680238 vs. ExPASy Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.282e-28
Identity = 57/114 (50.00%), Postives = 88/114 (77.19%), Query Frame = 2
Query:  305 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVD 646
            IDF+L S +H ++P GA ++ITSL   LN+STDAP+ ++E IQ SP+S+V++LDL PRKDL LHP+Y++ +YE T +D+ R+++E++P+ RPY S SL++R   SP+A+   +D
Sbjct:    1 IDFMLQSSLHCKVPNGA-IDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKDLALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTID 113          
The following BLAST results are available for this feature:
BLAST of EY680238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RCCR_ARATH7.509e-6462.50Red chlorophyll catabolite reductase, chloroplasti... [more]
RCCR_HORVU2.282e-2850.00Red chlorophyll catabolite reductase (Fragment) OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680238 ID=EY680238; Name=EY680238; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGCTCCTTCGAGATCAAAGTCCTCAACGTCGTCAACCGCCA
AAGTCAATTGTTCTGCCGCACCATCGTCATCTCCGATGGACTCGCACAAC
GAAGGCCGTAAGAAGTTCATGGAATTCCCCTACGCTTCAGGCCCTGTTAG
GCAGCTGATGGTTGATCTCGTATCAACGGTGGAGAATACCCTCGATTCGC
AGCTACTCCCTTGCACTCTGCCACCAGATGTACAGTATTACGAGAACCAA
AATGGCACTGCTCAAGCTTCTCTTCAAATCAGATCCGGGCTCAAGTCCTC
ACTGATTGATTTCATACTGGGAAGTTGGGTACACAGTGAGCTACCAACAG
GAGCAGCATTGAACATAACAAGCCTTTCAGCATATCTAAACTCTTCCACT
GATGCACCAAACTTGCTAATTGAGCTCATCCAGAGTAGCCCTTCTTCTCT
AGTCCTCATCCTTGACTTGTCTCCTCGAAAGGATCTTGTCCTCCATCCCG
ACTATCTTCAAACTTTCTATGAAAGCACACGGTTGGATGAATATAGGCAA
ATGCTTGAGAAAGTACCTGAAGTTAGACCCTACTTCTCGTCTTCCCTTTA
CTTAAGATGTGTCATCTCTCCTTCAGCAATTATGGTCCGTGTAGATACTG
AAACTGAAACTGGGGGCAGGTGAATCCCCCCGGTTGGGACTATATTATAA
CAAATCCTGGTGCTTCCTGGTTGCTAACCAAGTTTATGGAAATCCGGGCT
AAATCCAGGGGGCTTGGGGAAGGAAAAATTGTTAGGGGAATCAGAACAAG
GGTTATTTGGGAAAAAAGGGAAGGGGTTGGATTAAAAAAAAAAACTTTTT
TGGAATTGGTTTCCGCGCCCCAGCCTTTTTCCAAAAAAATTGT
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