EY680116

Overview
NameEY680116
Unique NameEY680116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.195e-49
Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = 1
Query:  124 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISK 522
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GT +A+MSSY+Y+S GLR Y  DN +DG  IAPA MDKLVVHI+K
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITK 147          

HSP 2 Score: 31.5722 bits (70), Expect = 2.195e-49
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  521 KKFLSQPNIKVPLILGTIGGR 583
            K F++ PN+KVPLILG  GG+
Sbjct:  147 KNFMTLPNMKVPLILGIWGGK 167          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.152e-45
Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  124 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GT YAVMSSYDY+SQGLR Y LDN +DG  IAPA MDKLVVHI+K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNF-LSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMS 190          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.152e-45
Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  124 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GT YAVMSSYDY+SQGLR Y LDN +DG  IAPA MDKLVVHI+K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNF-LSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMS 190          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.046e-44
Identity = 102/181 (56.35%), Postives = 123/181 (67.96%), Query Frame = 1
Query:  127 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GT YAV+SS+ YLS GLR Y  DN  DG  IAPA +DKLVVHI+K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNF-MTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMS 194          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44
Identity = 103/181 (56.91%), Postives = 126/181 (69.61%), Query Frame = 1
Query:  127 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GT YAVMSSY+YLS GLR  +LDN  DG  IAPA +DKLVVHI+K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNF-MTLPNIKVPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMS 192          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.436e-42
Identity = 98/182 (53.85%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  124 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGT +AV+ SY+Y+SQGLR Y LDN +DG  IAPA MDKLVVHI+K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNF-LKLPNIKVPLILGIWG-GKGQGKSFQCELVFRKMGINPIMMS 194          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.879e-41
Identity = 101/193 (52.33%), Postives = 126/193 (65.28%), Query Frame = 1
Query:  109 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGT +AV+SSY+Y+SQGLR Y LDN +DG  IAPA MDKLVVHI+K   +   +   P     WG  K +   F+ + V+ + G +P + S
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNF-LTLPNIKVPLILGIWG-GKGQGKSFQCELVMAKMGINPIMMS 190          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.141e-41
Identity = 96/186 (51.61%), Postives = 119/186 (63.98%), Query Frame = 1
Query:  112 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGT +AV+ SY+Y+SQGLR Y +DNT+DG  IAP+ MDKLVVHI+K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNF-LKLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMS 194          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.629e-40
Identity = 95/184 (51.63%), Postives = 124/184 (67.39%), Query Frame = 1
Query:  112 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGT +A+M+SY+Y+SQ L+TY+LDN +DG  IAPA MDKLVVHI+K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF-LTLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMS 189          
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 92/185 (49.73%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  103 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGT  AV+SSY+Y+S GLR Y  DN +DG  IAPA MDKL VHI K   +   +   P     WG  K +   F+ + V  + G +P + S
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF-LTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMS 187          
The following BLAST results are available for this feature:
BLAST of EY680116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_MALDO2.195e-4967.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR8.152e-4556.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR8.152e-4556.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.046e-4456.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.284e-4456.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC8.436e-4253.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.879e-4152.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC7.141e-4151.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN4.629e-4051.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.759e-3949.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-F02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680116 ID=EY680116; Name=EY680116; organism=Citrus sinensis; type=EST; length=915bp
CACGCGTCCGCAACACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTG
CATTACAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCG
CTAGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCT
GCAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGT
AAGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTA
CTGCTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGC
CTTGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGG
TGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCAGTATG
CTGTCATGAGTTCTTATGACTACCTCAGCCAAGGTCTCCGCACATACAAG
TTGGACAACACGATCGACGGTCTCAACATTGCCCCTGCTTTAATGGACAA
GCTTGTTGTTCACATCAGCAAAGAAGTTCCTGTCCCAGCCCAACATCAAG
GTTCCCCTCATTCTTGGGACAATTGGGGGGAGGCAAAGAAAAAGAAAAAT
CAATTCAAGAGAGACCATGTTTTACACCAAAAAGGCGCCTCCCCCCCCAT
AACAAGCACTCGCCGCAAAATCTGGCAAGTCGGGGATGCGAGGGAAAACA
CCACTAGATTTTGAACCAGCCAGAAGCCACACCACCGAAACCCAAACACT
CACGAAGCAGAAGAAGAAAGGAGCAAACATGACGCAAGCACACATAACCA
GCCGCCATAACCGACCCAAATAGAAAAACCGGAACGCCAATCCCCCCACA
GATCCTACCCCATGATGGACGACAACAAGACGCCACGAAAACAGCTCAAC
GACGCAACGACACGC
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