EY680116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 2.195e-49 Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = 1 Query: 124 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISK 522 P + NGS ++ SVPSS+F G+SLKKV+SR SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GT +A+MSSY+Y+S GLR Y DN +DG IAPA MDKLVVHI+K Sbjct: 15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITK 147 HSP 2 Score: 31.5722 bits (70), Expect = 2.195e-49 Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 2 Query: 521 KKFLSQPNIKVPLILGTIGGR 583 K F++ PN+KVPLILG GG+ Sbjct: 147 KNFMTLPNMKVPLILGIWGGK 167
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 8.152e-45 Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 1 Query: 124 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 PLS NGSGA S VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GT YAVMSSYDY+SQGLR Y LDN +DG IAPA MDKLVVHI+K + + P WG K + F+ + V + G +P + S Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNF-LSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMS 190
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 8.152e-45 Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 1 Query: 124 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 PLS NGSGA S VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GT YAVMSSYDY+SQGLR Y LDN +DG IAPA MDKLVVHI+K + + P WG K + F+ + V + G +P + S Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNF-LSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMS 190
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 4.046e-44 Identity = 102/181 (56.35%), Postives = 123/181 (67.96%), Query Frame = 1 Query: 127 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 L+ NGSG S PSS+FFGTSLKKV SSR+P SK+ S SFKI A E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM GT YAV+SS+ YLS GLR Y DN DG IAPA +DKLVVHI+K + + P WG K + F+ + V + G +P + S Sbjct: 16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNF-MTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMS 194
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2) HSP 1 Score: 178.333 bits (451), Expect = 5.284e-44 Identity = 103/181 (56.91%), Postives = 126/181 (69.61%), Query Frame = 1 Query: 127 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 L+ NGSGA S P+S+FFGTSLKK V+SR+P SKV + SFKI A E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM GT YAVMSSY+YLS GLR +LDN DG IAPA +DKLVVHI+K + + P WG K + F+ + V + G +P + S Sbjct: 16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNF-MTLPNIKVPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMS 192
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 8.436e-42 Identity = 98/182 (53.85%), Postives = 119/182 (65.38%), Query Frame = 1 Query: 124 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE VD KQT DRWKGL D SDDQQDITRGKG VDSLFQAP GTGT +AV+ SY+Y+SQGLR Y LDN +DG IAPA MDKLVVHI+K + + P WG K + F+ + V + G +P + S Sbjct: 15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNF-LKLPNIKVPLILGIWG-GKGQGKSFQCELVFRKMGINPIMMS 194
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 1.879e-41 Identity = 101/193 (52.33%), Postives = 126/193 (65.28%), Query Frame = 1 Query: 109 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 MAAAV PLS NGSG+ A S P+S+F G + VS +K + SFK+ A V E+KQT DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGT +AV+SSY+Y+SQGLR Y LDN +DG IAPA MDKLVVHI+K + + P WG K + F+ + V+ + G +P + S Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNF-LTLPNIKVPLILGIWG-GKGQGKSFQCELVMAKMGINPIMMS 190
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 7.141e-41 Identity = 96/186 (51.61%), Postives = 119/186 (63.98%), Query Frame = 1 Query: 112 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 A PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE D KQT DRWKGL D SDDQQDI RGKG VDSLFQAP GTGT +AV+ SY+Y+SQGLR Y +DNT+DG IAP+ MDKLVVHI+K + + P WG K + F+ + V + G +P + S Sbjct: 11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNF-LKLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMS 194
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.629e-40 Identity = 95/184 (51.63%), Postives = 124/184 (67.39%), Query Frame = 1 Query: 112 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 A+ PLS N S A TSVPS++FFG SLKKV ++ + KV + + ++ A EVDE TK+DRWKGL + SDDQQDI RGKG VDSLFQAP GTGT +A+M+SY+Y+SQ L+TY+LDN +DG IAPA MDKLVVHI+K + + P WG K + F+ + V + G +P + S Sbjct: 11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF-LTLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMS 189
BLAST of EY680116 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39 Identity = 92/185 (49.73%), Postives = 117/185 (63.24%), Query Frame = 1 Query: 103 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTQYAVMSSYDYLSQGLRTYKLDNTIDGLNIAPALMDKLVVHISKEVPVPAQHQGSPHSWDNWGEAKKKKNQFKRDHVLHQKGASPPITS 657 S + A + N S VP+S+F G+ LK VSSR SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG D LFQAPMGTGT AV+SSY+Y+S GLR Y DN +DG IAPA MDKL VHI K + + P WG K + F+ + V + G +P + S Sbjct: 6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF-LTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMS 187 The following BLAST results are available for this feature:
BLAST of EY680116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >EY680116 ID=EY680116; Name=EY680116; organism=Citrus sinensis; type=EST; length=915bpback to top |