EY680100

Overview
NameEY680100
Unique NameEY680100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680100_ssr653 microsatellite EY680100_ssr653:653..662. BLAST: Citrus ESTs to Prunus persica proteins V1
EY680100_ssr733 microsatellite EY680100_ssr733:733..744. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.635e-48
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 3
Query:    3 KGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVGCSFGTW 449
            +GF D+L +    + FF  L LEDLD ML G E  I ++DWKAHTEYNG+KE D QI WFWKI+ +M  E+++ +LFFWTS K +PVEGF GL+S+L+IY+  E  DRLP SHTCFYRLC P YP++ +M  RLR+I Q+HV  SFG W
Sbjct:  725 RGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAHTEYNGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGLSSKLYIYRLYEANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFGKW 873          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: RSP5_YEAST (E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae GN=RSP5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 3
Query:   84 MLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS-----RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVG 431
            +L G    I +EDWK HT+Y GY+E+D  I WFWK V E   EQR  LL F T    +PV GF  L       R  I K  E   +LP SHTCF R+  P Y     M  +L +  +E +G
Sbjct:  686 LLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGE-VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG 805          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 3
Query:    3 KGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS-----RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVG 431
            +GF++++  P+     F   ELE    +L G    I +EDWK HT+Y  Y END  I WFW+++ E   E++  LL F T    +PV GF  L       +  I K  EP ++LP +HTCF RL  P Y S   +  +L I  +E +G
Sbjct:  623 EGFSELI--PQELINVFDERELE----LLIGGISEIDMEDWKKHTDYRSYSENDQIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRKFTIEKAGEP-NKLPKAHTCFNRLDLPPYTSKKDLDHKLSIAVEETIG 763          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17
Identity = 49/120 (40.83%), Postives = 63/120 (52.50%), Query Frame = 3
Query:   84 MLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYK-TVEPA---DRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVG 431
            +L G    + VEDWK+HTEY  Y   D  I WFW+I+     E R  LL F T    +PV GF  L       K T+E A   D+LP +HTCF RL  P YPS   + ++L +  +  VG
Sbjct:  663 LLIGGISDVDVEDWKSHTEYRTYIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKAGTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAVENTVG 782          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 49/129 (37.98%), Postives = 66/129 (51.16%), Query Frame = 3
Query:   72 DLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVGCSFGT 446
            +LD +L G    I V+DWK  T+Y  Y E D  +IWFW+++ E   E++  LL F T    LP+ GF  +      R    + V    +LP +HTCF RL  P Y S   +  +L I  QE  G  FGT
Sbjct:  545 ELDTLLNGKRD-IDVQDWKRFTDYRSYTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGSDGPRKFTIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAG--FGT 670          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = 3
Query:    6 GFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA-----SRLHIYKTVEPADRLPTSHTCFYRLCFPSY 374
            GF+DI+  P    Q F   ELE    +L      I ++DWK +TEY+GY  +  Q+ WFW+ V     E+R  LL F T    +P+ GF  L       R +I+K+    +RLP SHTCF +L  P Y
Sbjct: 3082 GFSDII--PSHLIQIFNEQELE----LLISGLPEIDIDDWKNNTEYHGYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEY 3203          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 54/147 (36.73%), Postives = 73/147 (49.66%), Query Frame = 3
Query:    3 KGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVG 431
            +GF +IL  P+   Q+F + ELE    +L    Q I + DW+ H  Y  Y     QI+WFW+ V E+  E+R  LL F T    LPV GFA L      +    + V   + LP SHTCF RL  P Y S   + ++L    +E  G
Sbjct:  720 EGFNEIL--PQQYLQYFDAKELE----VLLCGMQEIDLNDWQRHAIYRHYTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 860          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 54/147 (36.73%), Postives = 73/147 (49.66%), Query Frame = 3
Query:    3 KGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVG 431
            +GF +IL  P+   Q+F + ELE    +L    Q I + DW+ H  Y  Y     QI+WFW+ V E+  E+R  LL F T    LPV GFA L      +    + V   + LP SHTCF RL  P Y S   + ++L    +E  G
Sbjct:  759 EGFNEIL--PQQYLQYFDAKELE----VLLCGMQEIDLNDWQRHAIYRHYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 899          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 50/152 (32.89%), Postives = 75/152 (49.34%), Query Frame = 3
Query:    3 KGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL-----ASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVGCSFG 443
            +GF +I+  P+     F   ELE    +L      I ++D K++TEY+ Y+ N  QI WFW+ +       R   L F T    +P++GFA L       +  I++     DRLP++HTCF +L  P+Y S   +   L +  QE   CS G
Sbjct:  176 EGFYEII--PKRLISIFTEQELE----LLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE---CSEG 318          
BLAST of EY680100 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 50/152 (32.89%), Postives = 75/152 (49.34%), Query Frame = 3
Query:    3 KGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL-----ASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAVMGDRLRIITQEHVGCSFG 443
            +GF +I+  P+     F   ELE    +L      I ++D K++TEY+ Y+ N  QI WFW+ +       R   L F T    +P++GFA L       +  I++     DRLP++HTCF +L  P+Y S   +   L +  QE   CS G
Sbjct: 4231 EGFYEII--PKRLISIFTEQELE----LLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE---CSEG 4373          
The following BLAST results are available for this feature:
BLAST of EY680100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
UPL5_ARATH9.635e-4857.72E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
RSP5_YEAST2.734e-1842.15E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces ... [more]
PUB1_SCHPO3.571e-1837.16E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]
PUB3_SCHPO3.948e-1740.83E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]
PUB2_SCHPO1.270e-1537.98E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
PTR1_SCHPO1.270e-1538.28E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
ITCH_MOUSE8.233e-1536.73E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
ITCH_HUMAN8.233e-1536.73E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]
HUWE1_RAT1.834e-1432.89E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE1.834e-1432.89E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-D10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680100 ID=EY680100; Name=EY680100; organism=Citrus sinensis; type=EST; length=881bp
CGAAAGGTTTTGCTGACATTCTTTGTAACCCAAGGCTCCAGAAGCAGTTT
TTCCTGAGTTTAGAGCTTGAAGATCTTGATCGAATGCTGTTTGGAAGTGA
GCAAGCCATATGTGTTGAAGATTGGAAGGCACATACTGAATACAATGGCT
ACAAAGAAAATGATGCTCAGATAATCTGGTTTTGGAAGATTGTTGGAGAA
ATGCCAGCAGAGCAGAGAAAGATCCTGCTTTTCTTTTGGACCTCAGTAAA
GCATCTTCCAGTCGAGGGCTTTGCTGGTTTGGCTTCTCGGCTTCACATTT
ACAAGACCGTGGAACCCGCTGATCGCCTTCCTACATCGCACACCTGCTTT
TACCGGTTGTGTTTTCCGTCTTATCCATCCATGGCCGTCATGGGGGATCG
GCTTCGCATCATCACACAAGAACATGTGGGCTGCAGCTTTGGAACTTGGT
GAGATACTTTGTCTGCCCTGGCGTCACAAGCGTTTCTGACTGCACATAAA
TTTGTATTCAGTTTGTACAGAGTTATAGAATACCGTCTTCCATTTTATGA
TCAAGACTATGTTAAGAAGGTCGTCTAGTTAATTGTCTTTGTGTCGTGAA
GTTTATGGTGTCATTGCCCTTTTTGTCACCTGTTTATAAAATATATTTAT
ATAGAGAGAGAGAAAAGTATAGCTTACCTTATAAATAAAGGTTGTATTAC
CAACCAGGGCAGGCAAGGCAAGGGCAGGGAAGGGAAGGAAGGAAAAAAAT
TTTCCTTCTTCCAAAACTTACTTAAAAATAAGTAAAACCTTTCCGTTTTT
GGGTCAGGTAAATACCCCCAAATGGAATGCAAGGACATTCAAAATCCAAC
AAAAAATTTTTCCGCTCCCAAAAAAAAAAAA
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