EY680095 | Citrus Genome Database

Overview


Name	EY680095
Unique Name	EY680095
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	908

Libraries


Library Name	Type
Sweet orange leaf, young greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SRR35_HUMAN (35 kDa SR repressor protein OS=Homo sapiens GN=SRRP35 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.990e-19
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARER 511
            TSL +RN+    RPEDLR  FG++G + D+Y+P D+YT  PRGF +VQ+ D  DA DA Y+++   + GR++ + FA+ +RK P +M+++ER
Sbjct:   10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.990e-19
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 508
            TSL VRN+  D R EDLR  FG++G + D+Y+P D+YT  PRGF +VQ+ D  DA DA +++D   + GR++ + FA+ +RK P++M+A+E
Sbjct:   10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SF13A_HUMAN (Splicing factor, arginine/serine-rich 13A OS=Homo sapiens GN=SFRS13A PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.990e-19
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRARE 508
            TSL VRN+  D R EDLR  FG++G + D+Y+P D+YT  PRGF +VQ+ D  DA DA +++D   + GR++ + FA+ +RK P++M+A+E
Sbjct:   10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 100

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.816e-15
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 505
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S    R
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

HSP 2 Score: 24.2534 bits (51), Expect = 5.816e-15
Identity = 18/48 (37.50%), Postives = 21/48 (43.75%), Query Frame = 3

Query:  618 PRRGRDSRSISPKYRKDRERSYSTSPLGVRSYFPNKNRDPNRDYSRMT 761
            PRR R SRS S    + R RS          Y  +K+R   R  SR T
Sbjct:  122 PRRRRRSRSRSRSRSRSRSRS---------RYSRSKSRSRTRSRSRST 160

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.816e-15
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 505
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S    R
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

HSP 2 Score: 24.2534 bits (51), Expect = 5.816e-15
Identity = 18/48 (37.50%), Postives = 21/48 (43.75%), Query Frame = 3

Query:  618 PRRGRDSRSISPKYRKDRERSYSTSPLGVRSYFPNKNRDPNRDYSRMT 761
            PRR R SRS S    + R RS          Y  +K+R   R  SR T
Sbjct:  122 PRRRRRSRSRSRSRSRSRSRS---------RYSRSKSRSRTRSRSRST 160

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.816e-15
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 505
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S    R
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

HSP 2 Score: 24.2534 bits (51), Expect = 5.816e-15
Identity = 18/48 (37.50%), Postives = 21/48 (43.75%), Query Frame = 3

Query:  618 PRRGRDSRSISPKYRKDRERSYSTSPLGVRSYFPNKNRDPNRDYSRMT 761
            PRR R SRS S    + R RS          Y  +K+R   R  SR T
Sbjct:  122 PRRRRRSRSRSRSRSRSRSRS---------RYSRSKSRSRTRSRSRST 160

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 5.816e-15
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 505
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S    R
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

HSP 2 Score: 24.2534 bits (51), Expect = 5.816e-15
Identity = 18/48 (37.50%), Postives = 21/48 (43.75%), Query Frame = 3

Query:  618 PRRGRDSRSISPKYRKDRERSYSTSPLGVRSYFPNKNRDPNRDYSRMT 761
            PRR R SRS S    + R RS          Y  +K+R   R  SR T
Sbjct:  122 PRRRRRSRSRSRSRSRSRSRS---------RYSRSKSRSRTRSRSRST 160

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 5.816e-15
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 505
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S    R
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

HSP 2 Score: 24.2534 bits (51), Expect = 5.816e-15
Identity = 18/48 (37.50%), Postives = 21/48 (43.75%), Query Frame = 3

Query:  618 PRRGRDSRSISPKYRKDRERSYSTSPLGVRSYFPNKNRDPNRDYSRMT 761
            PRR R SRS S    + R RS          Y  +K+R   R  SR T
Sbjct:  122 PRRRRRSRSRSRSRSRSRSRS---------RYSRSKSRSRTRSRSRST 160

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.816e-15
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 505
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S    R
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

HSP 2 Score: 24.2534 bits (51), Expect = 5.816e-15
Identity = 18/48 (37.50%), Postives = 21/48 (43.75%), Query Frame = 3

Query:  618 PRRGRDSRSISPKYRKDRERSYSTSPLGVRSYFPNKNRDPNRDYSRMT 761
            PRR R SRS S    + R RS          Y  +K+R   R  SR T
Sbjct:  122 PRRRRRSRSRSRSRSRSRSRS---------RYSRSKSRSRTRSRSRST 160

BLAST of EY680095 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.816e-15
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  236 TSLLVRNLRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKPSEMRAR 505
            TSL V NL +   P+ LR  F ++GR+ D+Y+PRD YT E RGF FV++ D  DA DA   MDG +L GREL V  A   R   S    R
Sbjct:   14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRR 103

HSP 2 Score: 24.2534 bits (51), Expect = 5.816e-15
Identity = 18/48 (37.50%), Postives = 21/48 (43.75%), Query Frame = 3

Query:  618 PRRGRDSRSISPKYRKDRERSYSTSPLGVRSYFPNKNRDPNRDYSRMT 761
            PRR R SRS S    + R RS          Y  +K+R   R  SR T
Sbjct:  122 PRRRRRSRSRSRSRSRSRSRS---------RYSRSKSRSRTRSRSRST 160

The following BLAST results are available for this feature:

BLAST of EY680095 vs. ExPASy Swiss-Prot

BLAST of EY680095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
SRR35_HUMAN	1.990e-19	45.65	35 kDa SR repressor protein OS=Homo sapiens GN=SRR...	[more]
SF13A_MOUSE	1.990e-19	47.25	Splicing factor, arginine/serine-rich 13A OS=Mus m...	[more]
SF13A_HUMAN	1.990e-19	47.25	Splicing factor, arginine/serine-rich 13A OS=Homo ...	[more]
SFRS2_RAT	5.816e-15	47.78	Splicing factor, arginine/serine-rich 2 OS=Rattus ...	[more]
SFRS2_PIG	5.816e-15	47.78	Splicing factor, arginine/serine-rich 2 OS=Sus scr...	[more]
SFRS2_PANTR	5.816e-15	47.78	Splicing factor, arginine/serine-rich 2 OS=Pan tro...	[more]
SFRS2_MOUSE	5.816e-15	47.78	Splicing factor, arginine/serine-rich 2 OS=Mus mus...	[more]
SFRS2_HUMAN	5.816e-15	47.78	Splicing factor, arginine/serine-rich 2 OS=Homo sa...	[more]
SFRS2_CHICK	5.816e-15	47.78	Splicing factor, arginine/serine-rich 2 OS=Gallus ...	[more]
SFRS2_BOVIN	5.816e-15	47.78	Splicing factor, arginine/serine-rich 2 OS=Bos tau...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-650-007-D05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY680095 ID=EY680095; Name=EY680095; organism=Citrus sinensis; type=EST; length=908bp
ATTGGAAGGTATAGAAGACTCGAGAGACGAATAAATAACCGAGGAAATTA
GAAAGGCGAAGCACAAAAAATTTTCGGAGCAGATTCGCTGATTCGTCCTT
CCGAGGTTGTGACATAGAGTGCCAATGAGGGGTCGAAGCTACAGTTACAG
TCCCTCGCCGCCAAGAGACTATGGCCGGAGATATCGCAGCCCCAGCCCTC
GCGGTCGCTATGGCGGTCGTGGAAGAGATCTCCCGACTAGTCTTCTGGTT
CGCAACCTTCGCCATGATTGTAGACCAGAAGATCTTCGTGGACCCTTTGG
GCAATTTGGTCGTTTAAAGGACATCTACTTGCCTCGAGACTATTATACTG
GGGAGCCACGTGGTTTTGGGTTTGTCCAGTATATAGACCCAGCTGATGCT
GCAGATGCCAAATACCACATGGATGGTTATTTACTTTTAGGCCGAGAACT
GACTGTTGTATTTGCCGAGGAAAACAGGAAGAAACCTTCAGAAATGAGGG
CAAGAGAACGTTTTAGGAGTCGATCATACGATGGGAGGCGATCTCCACCT
CGTTATTCTCGATCACCACACTATGCACGTGGTTATTCTCGAATTCCAGA
TTATTATTCTCCCTCCTCCCAGGCGAGGGCGAGACTCAAGGTCAATTTCC
CCTAAATACAGAAAGGACAGAGAGCGATCTTACTCAACGTCTCCTTTAGG
GGTCAGGAGCTATTTTCCCAACAAAAACAGGGATCCTAACCGGGACTACT
CCAGAATGACCTGAAATGACTTCCCTATTGCTGGAGGGTGGGGAAAGGAA
TAGTTTTTGTTTGCTTTAATGGGATGGAAAAAAAATAAAAACCTTTTCCG
GGTTTATGAATTTTGTGTTGGGGAATTACGTGTTTTTATCTGGGAAAACC
CTTAAAAG