EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680065_ssr18 microsatellite EY680065_ssr18:18..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RK24_PEA (50S ribosomal protein L24, chloroplastic OS=Pisum sativum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.540e-61
Identity = 120/172 (69.77%), Postives = 138/172 (80.23%), Query Frame = 1
Query:   94 FFGQRLSFPSLSP-VTVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVAT 606
            F GQ LS  +LSP +  KPT+K CLIV++LKRWERKECKPNSLPVLHK+HVK GDTVKVI+G +KG+IGEITK+F+HNS+V+VKDINLKTKHV               APIHSSNVMLYSKE +V SRVGHKVL++G RVRYLIKTGEIIDS ENWKKLKEAN++     AT
Sbjct:   23 FLGQPLSPITLSPFLQGKPTEKKCLIVMKLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQIGEITKIFKHNSSVIVKDINLKTKHVKSNQEGEPGQINKVEAPIHSSNVMLYSKEKDVTSRVGHKVLENGKRVRYLIKTGEIIDSEENWKKLKEANKKTAEVAAT 194          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RK24_TOBAC (50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.223e-60
Identity = 118/173 (68.21%), Postives = 131/173 (75.72%), Query Frame = 1
Query:   94 FFGQRLSFPSLSPVTVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA 612
            FFGQR S P   P  VK T+ PCLI  +LKRWERKECKPNSLPVLHKMHVK GDTVK+I+G DKGK+GEIT++ +HNS V+VKD+NLKTKHV               APIHSSNVMLYSKE +VASRVGHK LD+G RVRYLIKTGEIIDSAENWK  K    +EKT  A AA
Sbjct:   15 FFGQRFSPPLSLPPLVKSTEGPCLIQAKLKRWERKECKPNSLPVLHKMHVKLGDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQIVKIEAPIHSSNVMLYSKEQKVASRVGHKTLDNGKRVRYLIKTGEIIDSAENWK--KAVKEKEKTTEAVAA 185          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RK24_ARATH (50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana GN=RPL24 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 2.223e-60
Identity = 113/175 (64.57%), Postives = 134/175 (76.57%), Query Frame = 1
Query:   94 FFGQRLSFPSLSPVT--VKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA 612
            F GQRL  P    VT  VKP + PCL++ +LKRWERKECKPNSLP+LHKMHVK GDTVKVI+G DKGKIGE+TK+F HNST+++KD+NLKTKH+               APIHSSNVMLYSKE +V SRVGHKVL+DG +VRYLIKTGE+ID+ E WK LKEA  +E T+VA  +
Sbjct:   22 FLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKECKPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLKEAKDKETTQVAVTS 196          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RK24_SPIOL (50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea GN=RPL24 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 103/174 (59.20%), Postives = 128/174 (73.56%), Query Frame = 1
Query:   94 FFGQRLSFPSLSPVTVKPTD-KPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA 612
            F GQRL FPS + + VK     PCLIV+R+KRWERK+CKPNSLP LHK HVK GDTVKVI+G +KGKIGEI+K+ +HNSTV++KD+N KTKHV               A IHSSNVML  KE EVA RVGHK+L+D  +VRYLIKTGEI+D+ + WK+++   ++ +T VA AA
Sbjct:   20 FLGQRL-FPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQN-KKESETAVAVAA 191          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNP2 (50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplX PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.232e-27
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  205 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            + +S P  HKMHVK GDTV+VI+G DKGK+GE+ K    +S V+VKD+N++TKHV               APIHSSNVM YS++ +VASR+G+++ +DG +VR L KTGE+ID
Sbjct:    4 RKSSTPTRHKMHVKTGDTVQVISGRDKGKVGEVIKTLPKSSKVVVKDVNIRTKHVKPQQEGESGQIQTFEAPIHSSNVMHYSEKEKVASRIGYQLTEDGRKVRVLKKTGEVID 116          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_TRIEI (50S ribosomal protein L24 OS=Trichodesmium erythraeum (strain IMS101) GN=rplX PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  220 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            P+ +K+HVK GDTV++IAG DKGK+GE+ KV    S V+VKD+N+ TKHV               APIHSSNVMLYS + +VASR+ +   DDG +VR L KTGE+ID
Sbjct:   15 PIRYKVHVKKGDTVQIIAGKDKGKVGEVLKVLPKVSKVIVKDVNIITKHVKPQQEGESGKIVTTEAPIHSSNVMLYSTKQKVASRICYTFTDDGRKVRMLKKTGEVID 122          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_MICAN (50S ribosomal protein L24 OS=Microcystis aeruginosa (strain NIES-843) GN=rplX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.505e-24
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  220 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            P   KMHVK GD V+VIAG DKGK+GEI +     STV+VK +N++TKH                APIHSS VMLYS++ ++ASRVG+ + +DG +VR L KTGEIID
Sbjct:   10 PQRQKMHVKKGDVVQVIAGSDKGKVGEILRALPQESTVVVKGVNIRTKHTKPQQEGESGQIVTYEAPIHSSKVMLYSEKKKIASRVGYTLTEDGRKVRILKKTGEIID 117          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ANAVT (50S ribosomal protein L24 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplX PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.505e-24
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  205 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            K ++ P  HK+HVK GDTV+VIAG DKGK+GE+ K     S V+VK +N+KTKHV               APIHSSNVMLYS +  VASRV +    +G +VR L KTGEI+D+
Sbjct:    4 KKDTTPKFHKLHVKTGDTVQVIAGKDKGKVGEVIKALPQLSKVIVKGVNIKTKHVKPQQEGESGRIVTQEAPIHSSNVMLYSTKQNVASRVCYTFTAEGKKVRKLKKTGEILDN 117          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THEEB (50S ribosomal protein L24 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplX PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.966e-24
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 1
Query:  205 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K N  PV ++MHVK GDTV+VIAG DK K+GE+  VF   S V+VK +NLKTKH+               APIHS  VMLYS +  VASR+ +   +DG +VR L KTGEIID
Sbjct:    5 KANKKPVRYRMHVKKGDTVQVIAGSDKAKVGEVLAVFPKTSQVIVKGVNLKTKHLKPRQEGESGQIITKEAPIHSCKVMLYSTKQNVASRICYTYTEDGRKVRMLKKTGEIID 117          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CYAA5 (50S ribosomal protein L24 OS=Cyanothece sp. (strain ATCC 51142) GN=rplX PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.568e-24
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  220 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            P  +KMHVK GDT++VI+G DKGK+GE+ K     S V+VK +N+KTKHV               APIHSSNVMLYS + +VASR+ +   ++G +VR L KTGEIIDS
Sbjct:    7 PQRYKMHVKTGDTIQVISGRDKGKVGEVLKTIPTTSEVVVKGVNVKTKHVKPQQEGESGQIATFEAPIHSSNVMLYSTKEQVASRISYTFTEEGRKVRMLKKTGEIIDS 115          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RK24_PEA1.540e-6169.7750S ribosomal protein L24, chloroplastic OS=Pisum ... [more]
RK24_TOBAC2.223e-6068.2150S ribosomal protein L24, chloroplastic OS=Nicoti... [more]
RK24_ARATH2.223e-6064.5750S ribosomal protein L24, chloroplastic OS=Arabid... [more]
RK24_SPIOL4.203e-5159.2050S ribosomal protein L24, chloroplastic OS=Spinac... [more]
RL24_SYNP24.232e-2752.2150S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_TRIEI5.174e-2553.7050S ribosomal protein L24 OS=Trichodesmium erythra... [more]
RL24_MICAN1.505e-2452.7850S ribosomal protein L24 OS=Microcystis aeruginos... [more]
RL24_ANAVT1.505e-2451.7550S ribosomal protein L24 OS=Anabaena variabilis (... [more]
RL24_THEEB1.966e-2452.2150S ribosomal protein L24 OS=Thermosynechococcus e... [more]
RL24_CYAA52.568e-2452.2950S ribosomal protein L24 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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