EY680049

Overview
NameEY680049
Unique NameEY680049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY680049 vs. ExPASy Swiss-Prot
Match: PP434_ARATH (Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.437e-22
Identity = 49/170 (28.82%), Postives = 91/170 (53.53%), Query Frame = 1 
Query:   43 RSEIYDIIC-NDVISFLCKRGSSEVASELYMFMRKRGSFVTDQSYYSILKGLD-NGGKKWLIGPLLSMFVKENGLVEPMISKYLVQYLCLNDVTNALLFIKNMKEISSTVTIPVNVLKKLIKAGRVLDVYKLVMGA-EDSLPCMDVVDYSTIVAALCREGYVNKGVRSLC 543
            +S +   +C N +I  LCK+G  + A+E+ + + ++G ++   +  ++L  +  NGG K ++G +  +    + +   M++  ++          A+     M+    TVT P  +LK L+   R LD Y LV+ A E +L  MDV+DY+ I+  LC+EG++ K + +LC
Sbjct:  510 KSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNLRSLDAYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKAL-NLC 678

HSP 2 Score: 52.373 bits (124), Expect = 2.437e-22
Identity = 23/47 (48.94%), Postives = 38/47 (80.85%), Query Frame = 2 
Query:  521 IRALDLCAFARNKGITLNIVTYKTV*HSLCRQGCFVGSLFG*FDSLK 661
            ++AL+LC+FA+++G+TLN +TY ++ + LC+QGC V +L   FDSL+
Sbjct:  672 VKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEAL-RLFDSLE 717
The following BLAST results are available for this feature:
BLAST of EY680049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP434_ARATH2.437e-2228.82Pentatricopeptide repeat-containing protein At5g57... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-H04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680049 ID=EY680049; Name=EY680049; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGCTTGAATTTTGTTTACAGAATTGAGAACTTAAGATCGGA
AATATACGATATTATATGTAATGACGTGATTAGTTTCCTGTGCAAGAGAG
GTTCCTCTGAAGTTGCTAGTGAATTATACATGTTTATGAGGAAGAGAGGG
TCGTTTGTGACAGATCAGTCTTATTATTCTATATTGAAGGGACTTGATAA
TGGAGGCAAAAAGTGGCTGATTGGGCCTTTATTAAGTATGTTTGTGAAAG
AAAATGGCCTAGTCGAACCAATGATCAGCAAGTATTTAGTACAATACTTG
TGTCTGAATGATGTGACTAATGCCCTGCTGTTTATCAAGAATATGAAAGA
GATTTCTTCAACTGTCACTATTCCTGTCAATGTTCTCAAGAAACTTATTA
AGGCTGGTAGAGTGTTGGATGTGTATAAACTTGTCATGGGAGCTGAAGAT
AGTTTACCTTGTATGGATGTTGTTGATTATTCAACCATAGTTGCTGCACT
CTGCAGGGAAGGATATGTCAATAAGGGCGTTAGATCTCTGTGCTTTTGCT
AGAAATAAGGGGATCACTCTTAACATTGTCACTTATAAAACAGTTTAACA
CAGCTTATGCCGCCAGGGATGTTTTGTGGGAAGCCTTTTCGGCTAATTTG
ATTCGTTAAAAAAAAAATCCGATAATGGTTCCTTCCGAAATCTCCATTTG
CCCTTTTGATTTACAAATTTTAGGAAAGAAGGGAAATTGGCTAAATGCCC
AGAAATTGGTTGGAAAGGAAGGGTCCTCCAAGGGTTTTAAACCTAATAAC
CCTTTTTTTATAACCCCCTTTTTTAAAGGGTGTTTGGCAAGTTTGGGGCC
AATTGGGAAAAAAAACCCTTCCATTTTTTGGCGATGAATTTAAAAAAAAA
ACGTGGCCCTTGTGGCC
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