EY680044

Overview
NameEY680044
Unique NameEY680044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8630 contig Csv1_Contig8630:1..615. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY680044 vs. ExPASy Swiss-Prot
Match: Y1383_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1383 OS=Mycobacterium bovis GN=Mb1383 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.931e-17
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = -2
Query:   27 GKAHARYRKAVDDFSKAFVEFTRPLVGTMANANAMIAPVTVLATVLTFGLVFISLGWISAVEVLPFAIVAPGICAPLMLLSYITHDLNNAVGAAERVQALLATPVLAQVEPGSERLPKDAEVRV--ENLGYAYDPQNPVLSNISLTLKPGTVTAIVGASGSGKST 515
            G A + +R+ +D++    V + RPL G     +    P T L  +   G + ++   +  V +LPF  +     A L+ ++Y    L   + AA  +Q  L    LA  E   E L  +A   V  +++ + Y P  PV+ ++SLTL+PGTVTA+VG SGSGKST
Sbjct:  487 GAASSSFRRRLDEYIGFLVAWQRPLAGKKTLMDLATRPATFLWLIAATGTLLVATHRMDPVNLLPFMFLGTTFGARLLGIAYGLGGLRTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDVSLTLRPGTVTALVGPSGSGKST 651          
BLAST of EY680044 vs. ExPASy Swiss-Prot
Match: Y1348_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1348/MT1390 OS=Mycobacterium tuberculosis GN=Rv1348 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.931e-17
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = -2
Query:   27 GKAHARYRKAVDDFSKAFVEFTRPLVGTMANANAMIAPVTVLATVLTFGLVFISLGWISAVEVLPFAIVAPGICAPLMLLSYITHDLNNAVGAAERVQALLATPVLAQVEPGSERLPKDAEVRV--ENLGYAYDPQNPVLSNISLTLKPGTVTAIVGASGSGKST 515
            G A + +R+ +D++    V + RPL G     +    P T L  +   G + ++   +  V +LPF  +     A L+ ++Y    L   + AA  +Q  L    LA  E   E L  +A   V  +++ + Y P  PV+ ++SLTL+PGTVTA+VG SGSGKST
Sbjct:  487 GAASSSFRRRLDEYIGFLVAWQRPLAGKKTLMDLATRPATFLWLIAATGTLLVATHRMDPVNLLPFMFLGTTFGARLLGIAYGLGGLRTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDVSLTLRPGTVTALVGPSGSGKST 651          
BLAST of EY680044 vs. ExPASy Swiss-Prot
Match: Y1303_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1303c OS=Mycobacterium bovis GN=Mb1303c PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = -2
Query:   27 FVERMTRVNKRSRRVRQT--AFRWSKAFGAIGKAHARYRKAVDDFSKAFVEFTRPLVGTMANANAMIAPVTVLATVLTFGLVFISLGWISAVEVLPFAIVAPGICAPLMLLSYITHDLNNAVGAAERVQALLATPVLAQVEPGSERLPKDAEVRVENLGYAYDPQNPVLSNISLTLKPGTVTAIVGASGSGKST 602
            FV   T   + +  + +T   F   K FG    A  R+ +  DD  +A     + L G +  A A I  +  +A  +  GL  ++ G I+   +  F         PL  L+ + + L + V +AERV  +L  P  +  EP  E       V  E++ +AY P  PV+ ++SL  +PG+  AIVG +G+GK+T
Sbjct:  248 FVAHWTSTGRLNAHLEETYSGFTVVKTFGHQAAARERFHELNDDVYQAGFG-AQFLSGLVQPATAFIGNLGYVAVAVAGGLQ-VATGQITLGSIQAFIQYIRQFNMPLSQLAGMYNALQSGVASAERVFDVLDEPEESP-EPEPELPNLTGRVEFEHVNFAYLPGTPVIRDLSLVAEPGSTVAIVGPTGAGKTT 438          
BLAST of EY680044 vs. ExPASy Swiss-Prot
Match: Y1272_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1272c/MT1310 OS=Mycobacterium tuberculosis GN=Rv1272c PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = -2
Query:   27 FVERMTRVNKRSRRVRQT--AFRWSKAFGAIGKAHARYRKAVDDFSKAFVEFTRPLVGTMANANAMIAPVTVLATVLTFGLVFISLGWISAVEVLPFAIVAPGICAPLMLLSYITHDLNNAVGAAERVQALLATPVLAQVEPGSERLPKDAEVRVENLGYAYDPQNPVLSNISLTLKPGTVTAIVGASGSGKST 602
            FV   T   + +  + +T   F   K FG    A  R+ +  DD  +A     + L G +  A A I  +  +A  +  GL  ++ G I+   +  F         PL  L+ + + L + V +AERV  +L  P  +  EP  E       V  E++ +AY P  PV+ ++SL  +PG+  AIVG +G+GK+T
Sbjct:  248 FVAHWTSTGRLNAHLEETYSGFTVVKTFGHQAAARERFHELNDDVYQAGFG-AQFLSGLVQPATAFIGNLGYVAVAVAGGLQ-VATGQITLGSIQAFIQYIRQFNMPLSQLAGMYNALQSGVASAERVFDVLDEPEESP-EPEPELPNLTGRVEFEHVNFAYLPGTPVIRDLSLVAEPGSTVAIVGPTGAGKTT 438          
The following BLAST results are available for this feature:
BLAST of EY680044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1383_MYCBO7.931e-1733.33Uncharacterized ABC transporter ATP-binding protei... [more]
Y1348_MYCTU7.931e-1733.33Uncharacterized ABC transporter ATP-binding protei... [more]
Y1303_MYCBO8.493e-1129.38Uncharacterized ABC transporter ATP-binding protei... [more]
Y1272_MYCTU8.493e-1129.38Uncharacterized ABC transporter ATP-binding protei... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680044 ID=EY680044; Name=EY680044; organism=Citrus sinensis; type=EST; length=615bp
GGTCAGCAGTACGGTCCGGATTCCCGGGTCGACTTGCCCGAGCCCGAAGC
GCCGACGATGGCGGTGACGGTGCCGGGCTTGAGGGTCAAGCTGATATTCG
ACAGTACCGGGTTCTGCGGGTCGTAGGCGTACCCGAGGTTTTCCACGCGC
ACCTCGGCGTCCTTGGGCAGCCGCTCGGAACCCGGTTCCACCTGTGCCAG
CACCGGTGTCGCCAGCAGTGCCTGTACACGCTCGGCGGCGCCAACGGCGT
TGTTCAGGTCGTGAGTGATGTAACTCAGCAGCATCAGCGGCGCACAAATA
CCCGGCGCGACAATGGCGAACGGCAGCACCTCTACGGCGCTGATCCAGCC
CAGGCTGATAAACACCAGGCCGAACGTCAGCACCGTTGCCAGCACCGTCA
CCGGGGCGATCATTGCATTGGCGTTGGCCATCGTCCCCACCAGCGGCCGG
GTGAATTCAACGAAAGCTTTGCTGAAATCATCCACCGCTTTGCGGTACCT
TGCGTGGGCCTTGCCGATGGCACCGAAGGCCTTTGACCACCGGAATGCCG
TTTGACGAACTCGACGACTGCGTTTATTGACCCGGGTCATGCGTTCGACA
AAAGGCCTGCCCTGG
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